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UNITED STATES SECURITIES AND EXCHANGE COMMISSION
Washington, D.C. 20549
 
 
Form 10-K
     
(Mark One)    
þ
  ANNUAL REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
    For the fiscal year ended April 27, 2007
or
o
  TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
    For the transition period from          to          
 
Commission file number: 0-19806
 
 
 
 
Cyberonics, Inc.
(Exact name of registrant as specified in its charter)
 
     
Delaware   76-0236465
(State or other jurisdiction of
incorporation or organization)
  (I.R.S. Employer
Identification No.)
 
Cyberonics Building
100 Cyberonics Blvd.
Houston, Texas
77058-2072
(Address of principal executive offices)
(Zip Code)
 
Registrant’s telephone number, including area code:
(281) 228-7200
 
 
 
 
Securities registered pursuant to Section 12(b) of the Act:
 
     
Title of Each Class of Stock
 
Name of Each Exchange on Which Registered
 
Common Stock — $0.01 par value per share
  The NASDAQ Stock Market LLC
 
Securities registered pursuant to Section 12(g) of the Act:
None
 
 
 
 
Indicate by check mark if the registrant is a well-known seasoned issuer, as defined in Rule 405 of the Securities Act.  Yes o     No þ
 
Indicate by check mark if the registrant is not required to file reports pursuant to Section 13 or Section 15(d) of the Act.  Yes o     No þ
 
Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days.  Yes þ     No o
 
Indicate by check mark if disclosure of delinquent filers pursuant to Item 405 of Regulation S-K is not contained herein, and will not be contained, to the best of registrant’s knowledge, in definitive proxy or information statements incorporated by reference in Part III of this Form 10-K or any amendment to this Form 10-K.  þ
 
Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, or a non-accelerated filer. See definition of “accelerated filer and large accelerated filer” in Rule 12b-2 of the Exchange Act. (Check one):
 
Large accelerated filer o     Accelerated filer þ     Non-accelerated filer o
 
Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act).  Yes o     No þ
 
The aggregate market value of the voting and non-voting common equity held by non-affiliates of the registrant as of October 27, 2006, the last business day of the registrant’s most recently completed second fiscal quarter, was based upon the last sales price reported for such date on the NASDAQ Global Market, approximately $225 million. For purposes of this disclosure, shares of common stock held by persons who hold more than 5% of the outstanding shares of common stock and shares held by officers and directors of the registrant have been excluded in that such persons may be deemed to be affiliates.
 
At June 22, 2007, 26,579,760 shares of common stock were outstanding.
 
DOCUMENTS INCORPORATED BY REFERENCE
 
Portions of the definitive proxy statement of Cyberonics, Inc. for the 2007 Annual Meeting of Stockholders, which will be filed within 120 days of April 27, 2007, are incorporated by reference into Part III of this Annual Report on Form 10-K.
 


 

 
TABLE OF CONTENTS
 
                 
  Business   3
  Risk Factors   13
  Unresolved Staff Comments   22
  Properties   22
  Legal Proceedings   22
  Submission of Matters to a Vote of Security Holders   22
 
  Market for Registrant’s Common Equity, Related Stockholder Matters and Issuer Purchases of Equity Securities   23
  Selected Financial Data   24
  Management’s Discussion and Analysis of Financial Condition and Results of Operations   25
  Quantitative and Qualitative Disclosures About Market Risk   33
  Financial Statements and Supplementary Data   33
  Changes in and Disagreements With Accountants on Accounting and Financial Disclosure   33
  Controls and Procedures   34
  Other Information   37
 
  Directors, Executive Officers and Corporate Governance   37
  Executive Compensation   37
  Security Ownership of Certain Beneficial Owners and Management and Related Stockholder Matters   37
  Certain Relationships and Related Transactions, and Director Independence   37
  Principal Accountant Fees and Services   37
 
  Exhibits, Financial Statement Schedules   38
 Retention Agreement - John Riccardi
 Description of Non-Equity Incentive Compensation Plans
 Consulting Agreement between Cyberonics, Inc. and BK Consulting
 Executive Restricted Stock Agreement
 Non-Equity Incentive Compensation of Robert P. Cummins
 Consent of KPMG LLP
 Certification of CEO Pursuant to Section 302
 Certification of CFO Pursuant to Section 302
 Certification of CEO and CFO Pursuant to Section 906
 
 
In this Annual Report on Form 10-K, “Cyberonics,” “we,” “us” and “our” refer to Cyberonics, Inc. and
its consolidated subsidiary (Cyberonics Europe NV).
 
 


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CAUTIONARY STATEMENT ABOUT FORWARD-LOOKING STATEMENTS
 
This Annual Report on Form 10-K (this “Form 10-K”) contains forward-looking statements. These statements relate to future events or our future financial performance. We have attempted to identify forward-looking statements by terminology such as “expect,” “may,” “will,” “intend,” “anticipate,” “believe,” “estimate,” “could,” “possible,” “plan,” “project,” “forecast” and similar expressions. Our forward-looking statements generally relate to our growth strategies, financial results, reimbursement programs, product acceptance programs, product development programs, clinical and new indication development programs, regulatory approval programs, manufacturing processes and sales and marketing programs. Forward-looking statements should be carefully considered as involving a variety of risks and uncertainties, which include, but are not limited to:
 
  •  continued market acceptance of our VNS Therapy Systemtm (“VNS Therapy System”) and sales of our product;
 
  •  refusal by third-party payers to cover or adequately reimburse vagus nerve stimulation (“VNS”) therapy (“VNS Therapy”) for treatment-resistant depression (“TRD”) or refractory epilepsy;
 
  •  intellectual property protection and potential infringement claims;
 
  •  maintaining compliance with government regulations;
 
  •  obtaining necessary government approvals for new applications and retaining governmental approvals for existing applications;
 
  •  product liability claims and potential litigation;
 
  •  reliance upon single suppliers and manufacturers for certain components;
 
  •  the development, satisfactory completion and results of clinical trials and/or market tests of the VNS Therapy System for the treatment of epilepsy, TRD or other disorders;
 
  •  the accuracy of management’s estimates of future sales, expenses and capital requirements;
 
  •  changes in financial estimates and recommendations by securities analysts;
 
  •  changes in market valuations of medical device companies in general;
 
  •  additions or departures of key management personnel;
 
  •  possible acceleration of our convertible note debt;
 
  •  maintaining adequate insurance at economical rates;
 
  •  our ability to retire or refinance our debt at or before its maturity, which could be affected by conditions in financial markets or our financial position, and our ability to obtain any replacement long-term financing on terms as favorable to us, if at all;
 
  •  risks and costs associated with the previously disclosed inquiries by the Securities and Exchange Commission (“SEC”) staff and the United States (“U.S.”) Attorney and with any litigation relating thereto or to our stock option grants, procedures and practices;
 
  •  the impact of the restatement of our financial statements and any other actions that might be taken or required as a result of such inquiries, including a default under our credit facility or debt instruments;
 
  •  the potential identification of new material weaknesses in our internal controls over financial reporting; and
 
  •  uncertainties associated with stockholder derivative litigation.
 
No forward-looking statements can be guaranteed to be accurate and actual outcomes may vary materially. Although we believe that the expectations reflected in the forward-looking statements are reasonable, we cannot guarantee future results, levels of activity, performance or achievements. We will not update any of the forward-looking statements after the date of this Form 10-K to conform these statements to actual results, unless required by law.

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PART I
 
Item 1.   Business
 
General
 
Cyberonics, Inc. is a neuromodulation company founded to design, develop and bring to market medical devices that provide a unique therapy, VNS Therapy, for the treatment of epilepsy, TRD and other debilitating neurological or psychiatric diseases and other disorders. VNS Therapy consists of the electrical stimulation of the vagus nerve with an implantable device.
 
Our mission is to improve the lives of people touched by epilepsy, depression and other chronic disorders that may prove to be treatable with our VNS Therapy System. To achieve this mission, our plan is to become the market leader in neuromodulation by:
 
  •  repositioning VNS Therapy in a unique, defensible market position in epilepsy by rejuvenating growth and accelerating penetration of the epilepsy market;
 
  •  developing broad third-party reimbursement in TRD and positioning VNS Therapy to satisfy the unmet medical need in TRD; and
 
  •  focusing our financial resources to develop and expand future revenue growth.
 
The U.S. Food and Drug Administration (“FDA”) approved the VNS Therapy System in July 1997 for use as an adjunctive therapy in patients over 12 years of age in reducing the frequency of partial onset seizures that are refractory or resistant to antiepileptic drugs. Regulatory bodies in Canada, Europe, South America, Africa, India, Australia and certain countries in Eastern Asia have approved VNS Therapy for the treatment of epilepsy without age restrictions or seizure-type limitations. In July 2005, FDA also approved the VNS Therapy System for the adjunctive long-term treatment of chronic or recurrent depression for patients 18 years of age or older who are experiencing a major depressive episode and have not had an adequate response to four or more adequate anti-depressant treatments. Regulatory bodies in the European Union countries and Canada approved the VNS Therapy System for the treatment of chronic or recurrent depression in patients who are in a treatment-resistant or in a treatment-intolerant depressive episode without age restrictions.
 
Our ability to expand successfully the commercialization of the VNS Therapy System depends on obtaining and maintaining favorable coverage, coding and reimbursement for the implant procedure and follow-up care. Currently, we have broad coverage, coding and reimbursement for VNS Therapy for the treatment of epilepsy, but not for TRD. In May 2007, the Centers for Medicare & Medicaid Services (formerly the Healthcare Financing Administration) (“CMS”) issued a national non-coverage determination for TRD. CMS’s national non-coverage determination means that Medicare coverage is not available for VNS Therapy to treat TRD. Prior to the non-coverage determination, some patients were able to obtain coverage on a case-by-case basis through their local Medicare contractor or Fiscal Intermediary. Since the national non-coverage determination is binding on all local Medicare contractors, patients will no longer be able to obtain Medicare coverage on a case-by-case basis. As a consequence, CMS’s non-coverage determination will result in fewer sales of the VNS Therapy System for TRD. The determination may also have an adverse impact on coverage decisions by other payers. We will continue to pursue favorable coverage decisions to expand reimbursement to include VNS Therapy for TRD. We will also continue to assist some patients seeking TRD coverage on a case-by-case basis; however, our long-term growth in TRD is dependent on our progress in obtaining favorable regional and national coverage policies from third-party payers in the use of VNS Therapy to treat TRD.
 
Our clinical development program has included pilot and pivotal studies using VNS Therapy (1) as an adjunctive therapy for reducing the frequency of seizures in patients over 12 years of age with partial onset seizures that are refractory to antiepileptic drugs and (2) as an adjunctive treatment of patients 18 years of age and older with chronic or recurrent TRD in a major depressive episode. We have also conducted or provided support for small pilot studies for the treatment of Alzheimer’s Disease, anxiety disorders, chronic headache, bulimia and other disorders. These studies have been conducted to determine the safety and effectiveness of VNS Therapy and to determine new indications that might be considered for pivotal studies.


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Since inception, we have incurred substantial expenses, primarily for research and development activities that include product and process development and clinical trials and related regulatory activities, sales and marketing activities, manufacturing start-up costs and systems infrastructure. We made significant investments in connection with sales and marketing activities in the U.S. in fiscal 2006 and clinical research costs in fiscal 2006 and 2007 associated most notably with depression; however, we began scaling back our TRD sales and marketing spending in fiscal year 2007 after it became apparent that difficulties in obtaining reimbursement coverage for TRD are limiting TRD sales. Since our inception through April 27, 2007, we incurred an accumulated net deficit of approximately $259 million. For more information, see “Item 7. Management’s Discussion and Analysis of Financial Condition and Results of Operations” in this Form 10-K.
 
VNS Therapy Epilepsy Indication Overview
 
Epilepsy is a disorder of the brain characterized by recurrent seizures that are categorized as either partial or generalized at onset. Patients who continue to have unsatisfactory seizure control or intolerable side effects after treatment with appropriate antiepileptic therapies for a reasonable period of time are said to suffer from refractory epilepsy. For reasons that are not clear, partial onset seizures are generally more refractory to existing therapies than generalized seizures. Epilepsy is the second most prevalent neurological disorder. It is estimated that approximately 2.8 million individuals in the U.S. have epilepsy, with approximately 150,000 new cases diagnosed each year, and that there are in excess of 3.3 million individuals with epilepsy in Western Europe with over 210,000 new cases diagnosed each year. In addition, it is estimated that approximately 50% of patients with epilepsy suffer from partial onset seizures and that over 30% of these patients continue to suffer from seizures in spite of treatment with antiepileptic drugs. The medical, psychological, sociological and financial implications of refractory epilepsy can be profound for individuals and their families. Medical consequences may include brain damage from recurrent seizures, injuries and accidents associated with the loss or impairment of consciousness and death. Personal implications of epilepsy may include suffering the side effects of antiepileptic drugs, strained personal and family relations, and the inability to obtain and hold meaningful employment or a driver’s license. There are two standard types of treatment available to persons with epilepsy: drug therapy and surgery. Antiepileptic drugs serve as a first-line treatment and are prescribed for virtually all individuals being treated for epilepsy. When drug therapy is not effective, surgical resection may be an option for some patients. There are a number of other treatments under development for the treatment of epilepsy, including direct deep brain stimulation (“DBS”) and the Responsive Neurostimulator System (“RNStm”), but these treatments are not currently approved for commercial distribution.
 
VNS Therapy for Epilepsy
 
The VNS Therapy System is indicated as an adjunctive treatment for patients who are refractory to antiepileptic drugs. In the two randomized, parallel, double-blind, active-controlled studies that led to FDA approval of the epilepsy indication, the patients who received adjunctive VNS Therapy had a mean seizure reduction of approximately 24% and 28% during the three-month acute phase of the studies. Additionally, many patients, including some who reported no change or an increase in seizure frequency, also reported a reduction in seizure severity. Long-term follow-up data, derived from an uncontrolled protocol, on the 440 patients in five studies showed that efficacy was maintained and, for many patients, improved over time during treatment with the VNS Therapy System. Analysis of the pooled data showed that the median percent seizure reduction was 44% after 24 months of treatment and was sustained at that level at 36 months. In the treatment of refractory epilepsy, the side effects associated with the VNS Therapy System are generally mild, localized and related to the period of time in which stimulation is activated. The side effects include voice alteration, neck discomfort, increased cough, shortness of breath and difficulty swallowing. The VNS Therapy System has not typically been associated with the debilitating central nervous system side effects that frequently accompany antiepileptic drugs. Additionally, side effects typically decrease over time. To date, over 42,000 patients have accumulated in excess of 175,000 patient years of treatment experience with the VNS Therapy System.
 
VNS Therapy Depression Indication Overview
 
Major depressive disorder is one of the most prevalent and serious illnesses in the U.S. It affects nearly 19 million Americans 18 years of age or older every year. Recently published data indicate that approximately one-


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third of patients with major depressive disorder will not achieve a remission of their depressive symptoms after four acute treatment steps using standard therapies. Depression is the second leading cause of disability for the general population and is the leading cause of disability for American women. Depression interferes with a person’s ability to function, feel pleasure or maintain interest in everyday living. It is associated with increased mortality due to suicide and co-morbid general medical conditions. Total annual costs for depression in the U.S. are estimated to exceed $80 billion, including $30 billion in annual direct treatment costs. Standard treatment modalities for depression include antidepressant drugs, psychotherapy and electroconvulsive therapy (“ECT”). First-line therapy often consists of an antidepressant drug. For patients who do not respond adequately to initial antidepressant treatment, physicians will often switch to a different drug or use two drugs in combination. Physicians usually reserve ECT for patients who have not had an adequate response to multiple trials of antidepressant drugs or when they determine a rapid response to treatment is desirable. There are a number of other treatments under development for the treatment of TRD, including repetitive transcranial magnetic stimulation (“rTMS”) and DBS, but these treatments are not currently approved for commercial distribution.
 
VNS Therapy for Depression
 
The VNS Therapy System is indicated as an adjunctive treatment for patients who have chronic or recurrent treatment-resistant depression. In Canada and the European Union, the indication for use also encompasses patients who do not tolerate standard treatment. FDA approved the TRD indication for the VNS Therapy System based on a long-term uncontrolled trial (the “pivotal” trial) of adjunctive VNS Therapy that showed significant, sustained improvement of depressive symptoms over one and two years, and based on a comparison of the 12-month outcomes in the pivotal trial with the 12-month outcomes among a non-randomized, but well-matched, group of patients who received only standard treatments for their TRD. After one year of adjunctive VNS Therapy in the pivotal trial, response to treatment ranged from 22% to 37% (depending on the outcome measure). Moreover, 60% of the patients who responded after three months of adjunctive VNS Therapy were still responders at one year and 70% of the three-month responders were responders at the two-year evaluation. For those patients who were responders at the one-year evaluation, 69% were still responders at the two-year evaluation. VNS Therapy was generally well tolerated in the depression clinical studies. The most commonly reported adverse events were similar to those observed in patients being treated with VNS Therapy for epilepsy and included voice alteration, neck discomfort, increased cough, shortness of breath and difficulty swallowing. These side effects tended to occur during stimulation, tended to be reported as mild or moderate and tended to be reported less frequently over time.
 
FDA Post-Approval Study Commitments and Other Clinical Research Studies
 
As a condition of approval for the VNS Therapy System TRD indication, the FDA is requiring us to conduct two post-approval studies. One is a 460-patient randomized, controlled study that compares outcomes for different levels of vagus nerve stimulation. The other is a patient registry that will include 1,000 patients treated with adjunctive VNS Therapy. Both studies are actively enrolling patients. To maintain timely progress in the 460-patient dosing study, we announced a program in early 2007 whereby we are donating the VNS Therapy Systems and paying for the surgical implantation of the devices (at a negotiated rate) for patients being enrolled in the study. We are also sponsoring post-marketing studies in refractory epilepsy, and we are supporting a variety of mechanism-of-actions studies to improve the fundamental understanding of how VNS Therapy works. We expect to continue to invest in similar research activities as appropriate.
 
VNS Therapy System
 
VNS Therapy is the first treatment approved by FDA for both medically refractory epilepsy and TRD. The safety profiles for VNS Therapy and the VNS Therapy System, including the implant procedure, are well established in clinical studies of refractory epilepsy and TRD and in commercial use in over 45,000 patients with over 180,000 total patient years of experience.
 
The VNS Therapy System is a proprietary, integrated system consisting of an implantable generator that delivers an electrical signal to an implantable lead attached to the left vagus nerve. The vagus nerve is the longest of the cranial nerves, extending from the brain stem through the neck to organs in the chest and abdomen. The left vagus nerve has been shown to have influence over numerous areas of the brain. Preclinical studies and mechanism-


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of-action research suggest that intermittent stimulation of the left vagus nerve in the neck modulates a number of structures and alters blood flow bilaterally in several areas of the brain. These studies have also shown that stimulation of the left cervical vagus nerve is effective in blocking seizures and results in persistent or carryover antiepileptic effects, which increase with chronic intermittent stimulation. The mechanism-of-action research associated with our TRD studies has shown stimulation of the left vagus nerve results in modulation of areas of the brain thought to be important in the regulation of mood.
 
The VNS Therapy System consists of a pulse generator, a bipolar lead, a programming wand and software and a tunneling tool. The pulse generator and bipolar lead are surgically implanted in a procedure that takes from 30 to 90 minutes, during which time the patient is under general, regional or local anesthesia. The pulse generator is surgically implanted in a subcutaneous pocket in the upper left chest. The bipolar lead is connected to the pulse generator and attached to the vagus nerve in the lower left side of the patient’s neck. The patient is generally admitted to the hospital on the day of surgery and discharged the same or following day.
 
The VNS Therapy System delivers VNS on a chronic, intermittent basis. The initial standard stimulation parameters that we typically recommend are a 30-second period of stimulation, which we refer to as ON time, followed by a five-minute period without stimulation, which we refer to as OFF time. To optimize patient treatment, the current pulse width, amplitude and frequency and stimulation ON and OFF intervals of the pulse generator can be programmed non-invasively and adjusted by the treating physician with a personal or handheld computer using our programming wand and software. In addition, the patient can use a small, handheld magnet provided with the pulse generator to manually activate or deactivate stimulation. On-demand therapy can be useful for those epilepsy patients who sense an oncoming seizure and has been reported by a number of patients to abort or reduce the severity or duration of seizures. The magnet can also be used to provide patient control of stimulation side effects by allowing the patient to deactivate stimulation temporarily.
 
Pulse Generator.  The pulse generator is an implantable, programmable signal generator designed to be coupled with the bipolar lead to deliver electrical signals to the vagus nerve. The pulse generator is a battery powered device. Upon depletion of the battery, the pulse generator is removed and a new generator is implanted in a short, outpatient procedure using local anesthesia.
 
Bipolar Lead.  The bipolar lead conveys the electrical signal from the pulse generator to the vagus nerve. The lead incorporates electrodes, which are self-sizing and flexible, minimizing mechanical trauma to the nerve and allowing body fluid interchange within the nerve structure. The lead’s two electrodes and anchor tether wrap around the vagus nerve and the connector end is tunneled subcutaneously to the chest where it attaches to the pulse generator. The leads are available in two sizes of inner spiral diameter to ensure optimal electrode placement on different size nerves.
 
Programming Wand and Software.  Our programming wand and proprietary software are used to interrogate the device and to transmit programming information from a personal or handheld computer to the pulse generator via electromagnetic signals. Programming capabilities include modification of the pulse generator’s programmable parameters (pulse width, amplitude, frequency and ON and OFF intervals) and storage and retrieval of telemetry data.
 
Tunneling Tool.  The tunneling tool is a single use, sterile, disposable surgical tool designed to be used during surgical placement of the bipolar lead. The tool is used for subcutaneous tunneling of the lead assembly between the nerve site in the neck and the pulse generator site in the chest.
 
Accessory Pack.  The Accessory Pack includes two resistor assemblies used to test the function of the device prior to implantation, the bipolar lead tie-downs and one hex screwdriver.
 
The implant procedure, including the cost of the device (approximately $17,000 for a Model 102 VNS Therapy System), hospital charges and physician fees, generally costs between $23,000 and $38,000.
 
Manufacturing and Sources of Supply
 
Our manufacturing operations are required to comply with FDA’s Quality System Regulation (“QSR”), which incorporates the agency’s former Good Manufacturing Practices regulations. The QSR is promulgated under


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section 520 of the Food, Drug and Cosmetic Act. It requires that manufacturers have a quality system for the design and production of medical devices. The regulation also requires that:
 
  •  various specifications and controls be established for devices;
 
  •  devices be designed under a quality system to meet these specifications;
 
  •  devices be manufactured under a quality system;
 
  •  finished devices meet these specifications;
 
  •  devices be correctly installed, checked and serviced;
 
  •  quality data be analyzed to identify and correct quality problems; and
 
  •  complaints be processed.
 
Thus, the QSR helps assure that medical devices are safe and effective for their intended use. In addition, certain international markets have regulatory, quality assurance and manufacturing requirements that may be more or less rigorous than those in the U.S. Specifically, we have authorized KEMA Registered Quality, Inc. (“KEMA”) to ensure that we are in compliance with the requirements of International Standards Organization 13485:2003, “Medical devices — Quality management systems — Requirements for regulatory purposes” and the European Council Directive 90/385/CEE relating to Active Implantable Medical Devices (“AIMD”). KEMA is a Notified Body within the scope and framework of the European Council Directive 90/385/CEE relating to AIMD. We are audited by KEMA on an annual basis for such compliance.
 
The Model 102 and 102R VNS Therapy Pulse Generators, the only pulse generators we currently offer in the U.S., are similar in design and manufacture to a cardiac pacemaker. The Model 102 and 102R generators are comprised of one printed circuit board and a battery hermetically sealed in a titanium case. Standard components are assembled on printed circuit boards using surface-mount technology. The assembled circuit boards are then tested and mounted with the battery in the titanium case, which is laser welded. A header to which the bipolar lead connects is added and each unit is subject to final release testing prior to being sterilized.
 
Marketing and Sales
 
United States
 
We market and sell our products for refractory epilepsy and treatment-resistant depression through a direct sales force in the U.S. Our sales and marketing plan focuses on creating awareness and demand for the VNS Therapy System among epileptologists and neurologists who treat refractory epilepsy, psychiatrists who treat TRD, implanting surgeons, nurses, third-party payers, hospitals, patients and their families.
 
To reach each of these groups, we are using a specialized sales force consisting of:
 
  •  sales personnel with medical device, pharmaceutical, or nursing experience;
 
  •  reimbursement specialists experienced in obtaining third-party coverage and payments for new medical technologies;
 
  •  account executives and field clinical engineers experienced in obtaining, training and maintaining adequate surgical capacity for implanting the VNS Therapy System;
 
  •  marketing teams experienced in educational and promotional marketing programs; and
 
  •  case managers experienced in patient education, insurance verification and authorization issues.
 
In addition to our direct selling activities, we facilitate and support peer-to-peer interactions such as symposia, conference presentations, journal articles and patient support groups to provide experienced clinicians and patients the opportunity to share their perspectives on the VNS Therapy System with others.
 
In July 2005, FDA approved VNS Therapy as a long-term adjunctive treatment for patients 18 years of age or older with chronic or recurrent treatment-resistant depression in a major depressive episode and who have not


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responded to at least four adequate antidepressant treatments. Throughout fiscal 2006, we focused the efforts of our organization on the U.S. launch in TRD, and we structured our sales and case management organization to support anticipated sales demand in both the epilepsy and depression markets. Although patient and physician demand was strong, our actual sales did not increase to the extent anticipated due to a particularly challenging reimbursement environment. In fiscal 2007, we did not experience and do not anticipate any meaningful sales growth in TRD until such time as we obtain favorable coverage policies for VNS Therapy in TRD.
 
International
 
We market and sell our products in 71 countries through a combination of a direct sales force in certain European countries and distributors elsewhere. The VNS Therapy System is currently sold by a direct sales force in Austria, Belgium, Denmark, France, Germany, Italy, Luxemburg, The Netherlands, Norway, Spain, Sweden, Switzerland and the United Kingdom. We have distribution agreements with independent distributors covering a number of other countries, principally in Europe, Asia, South Africa, Australia, Mexico, South America and Canada. The distribution agreements generally grant the distributor exclusive rights for the particular territory for a period of three years. The distributor generally assumes responsibility for obtaining regulatory and reimbursement approvals for such territory and agrees to certain minimum marketing and sales expenditures and purchase commitments. Under the terms of the distributor agreements, no product return rights are granted to the distributor and no additional product performance issues exist for us after shipment to the distributor. Pricing is generally fixed under the terms of the distribution agreements, but may change at our election, with as little as 30 days prior notice under most agreements. Sales incentives, if provided, are recorded as a reduction of net sales in the same period revenue is recognized.
 
Third-Party Reimbursement
 
Our ability to expand successfully the commercialization of the VNS Therapy System depends on obtaining and maintaining favorable coding, reimbursement and coverage for the implant procedure and follow-up care. In fiscal 2007, the coding that describes VNS related procedures was unchanged and continues to adequately and appropriately describe services of providers. Reimbursement or payment rates were largely unchanged over the past year, with a slight decline in the Medicare allowable amount. In epilepsy, the coverage environment was largely unchanged. In TRD, coverage for VNS Therapy was difficult to obtain throughout the year.
 
In deciding to cover a new therapy, payers base their initial coverage decisions on several factors including, but not limited to:
 
  •  the status of FDA’s review of the product;
 
  •  CMS’s national coverage determinations, as well as local coverage determinations by Medicare contractors;
 
  •  BlueCross BlueShield Technology Evaluation Center recommendations;
 
  •  the product’s safety and efficacy;
 
  •  the number of studies performed and peer-reviewed articles published with respect to the product; and
 
  •  how the product and therapy compare to alternative therapies.
 
Our Reimbursement Department is available to assist hospitals and physicians with reimbursement questions. Regional Reimbursement Managers and Case Managers are available through our Reimbursement Hotline, to help with coverage, coding and reimbursement issues on a case-by-case basis and/or policy level. In epilepsy, virtually all technology assessments are favorable and most payers have coverage policies. In TRD, all the technology assessments are negative, and there are few plans with favorable coverage policies.
 
Medicare
 
Effective July 1, 1999, CMS issued National Coverage Policy Transmittal 114 (CIM Section 60-22). Under the policy, VNS Therapy is covered for patients with medically refractory partial onset seizures for whom surgery is not recommended or for whom surgery has failed. In May 2007, CMS issued its Coverage Decision Memorandum for


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Vagus Nerve Stimulation for Treatment-Resistant Depression, concluding that Medicare coverage is not available for VNS Therapy as a treatment for TRD. For additional information, see “General” above.
 
Medicaid
 
Medicaid programs generally cover hospital inpatient and outpatient services that are medically necessary and appropriate. In epilepsy, most state Medicaid agencies have developed their own coverage policy for VNS Therapy or have adopted the National CMS coverage policy. In TRD, a small number of Medicaid programs provide coverage for VNS Therapy on a case-by-case basis, but most are still evaluating a coverage policy or have issued a non-coverage policy. CMS’s non-coverage determination on Medicare coverage for the treatment of TRD will make gaining coverage with Medicaid programs more difficult.
 
Medicaid reimbursement mechanisms vary state by state. Medicaid policy and payment methodologies change on a regular basis, so vigilant and ongoing work is necessary to ensure continued access and acceptable reimbursement for patients covered by Medicaid programs. Reimbursement codes are already in place to pay for the cost of the device implantation and the surgeon implant fees, both of which are identical in the treatment of refractory epilepsy and TRD. Existing prescriber codes for device interrogation and dosage adjustment currently cover medical professionals in the epilepsy medical community.
 
Private Payers
 
Private payers generally cover hospital inpatient and outpatient services that are considered to be medically necessary. Currently, private payers (commercial, managed care and other third-party payers) account for 50% to 60% of patients implanted with the VNS Therapy System. As with other payers, many private payers have developed clinical guidelines for coverage or adopted the national CMS coverage policy for use of VNS Therapy in epilepsy. As of the end of fiscal year 2007, coverage for VNS Therapy for TRD is very limited. Only a few plans have issued favorable coverage policies for VNS Therapy in TRD, and less than 100 are providing coverage on a case-by-case basis. Most plans have either no policy or a non-coverage policy. Following the May 2007 CMS national non-coverage determination for TRD, we may have difficulty expanding or even maintaining coverage among private payers.
 
While we believe the clinical evidence supporting VNS Therapy for TRD should be adequate to convince private payers to provide coverage over the long term, coverage approval is subject to each payer’s assessment program. We are actively working with private payers to gain approval of coverage for VNS Therapy in TRD, but we cannot give any assurances that private payers will expand or maintain coverage for VNS Therapy in TRD.
 
Payment rates vary among third-party plans based on contracts and payment methods of specific providers. Audits of providers have revealed that the average reimbursement rates for VNS Therapy-related procedures are generally acceptable to the providers.
 
Although the VNS Therapy System has been approved for commercial distribution in European Union countries and Canada for the treatment of chronic or recurrent depression, we do not anticipate significant sales volumes until reimbursement approvals are achieved in these countries. We are continuing to pursue appropriate reimbursement approvals in these countries.
 
Product Development
 
Our product development efforts are directed toward improving the VNS Therapy System and developing new products that provide additional features and functionality while improving cost effectiveness.
 
In May 2005, we received approval from KEMA Medical, our European Regulatory Notified body, to market our DEMIPULSEtm and DEMIPULSE DUOtm VNS Therapy System generators in the member countries of the European Union for the approved epilepsy and depression indications for use. The DEMIPULSEtm generator is the next generation single-connector VNS Therapy System generator for use in new patients, and the DEMIPULSE DUOtm generator is the next generation dual-connector VNS Therapy System generator for use in patients who have elected replacement of their previous dual-connector generator at the end of its battery life. Both the DEMIPULSEtm and DEMIPULSE DUOtm generators are capable of delivering greater functionality and are smaller and


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lighter than the previous models. We submitted the Premarket Approval Application Supplement (“PMA-S”) for both the DEMIPULSEtm and the DEMIPULSE DUOtm generators to FDA in January 2007 and initiated limited release in Europe in May 2007. We anticipate FDA approval during the latter half of 2007 and commercial release prior to the end of 2007.
 
The VNS Therapy PERENNIAtm Lead was approved by FDA in May 2006 and by KEMA Medical in August 2006. The lead is currently in a limited commercial release. Functionally, the new lead is the same as its reliable predecessor, the Model 302 Lead, but it incorporates a new design and is constructed from more durable components. Mechanical tests conducted in a laboratory setting have shown the PERENNIAtm Lead to be more robust than its predecessor.
 
We received approval for Model 250, Version 7.1 software from KEMA in May 2006 and from FDA in June 2006.
 
We are conducting ongoing product development programs to enhance the VNS Therapy System pulse generator, the bipolar lead and programming software. We will be required to file for the appropriate U.S. and international regulatory approvals, and some projects may require clinical trials, in connection with the introduction of new and improved products.
 
Competition
 
We believe that in the fields of refractory epilepsy and TRD, existing and future drug therapies are and will continue to be the primary competition for the VNS Therapy System. We may also face competition from other medical device companies for the treatment of partial seizures and TRD. Medtronic, Inc., for example, continues to conduct clinical studies involving an implantable signal generator used with an invasive deep brain probe for the treatment of neurological disorders including depression, and has received FDA approval for the device for the treatment of essential tremor and Parkinson’s Disease. We could also face competition from other large medical device and pharmaceutical companies that have the technology, experience and capital resources to develop alternative devices for the treatment of epilepsy. Many of our competitors have substantially greater financial, manufacturing, marketing and technical resources than we have. In addition, the healthcare industry is characterized by extensive research efforts and rapid technological progress. Our competitors may develop technologies and obtain regulatory approval for products that are more effective in treating epilepsy or TRD than our current or future products. In addition, advancements in surgical techniques could make surgery a more attractive therapy for epilepsy. The development by others of new treatment methods with novel antiepileptic and depression drugs, medical devices or surgical techniques for epilepsy could render the VNS Therapy System noncompetitive or obsolete.
 
We believe that the primary competitive factors within the epilepsy and TRD treatment markets are the efficacy and safety of the treatment relative to alternative therapies, physician and patient acceptance of the product and procedure, availability of third-party reimbursement for the treatment of epilepsy, quality of life improvements and product reliability. We also believe that the VNS Therapy System compares favorably with competitive products as to these factors.
 
While no other therapies have been specifically approved for TRD, a well-established array of antidepressant drugs, typically combined with other antidepressants of complementary action or with atypical antipsychotic drugs and/or mood stabilizers, are frequently used for refractory patients. For severe patients or those at acute risk for suicide, ECT is often used. These treatment modalities may pose a competitive threat in the near term, to the extent that they may delay a decision to offer VNS Therapy to TRD patients. As other forms of neurostimulation are investigated and developed for TRD, these may emerge as competition for VNS patient candidates. Less invasive procedures like rTMS and MST (magnetic seizure therapy) may compete for a similar place in the TRD treatment algorithm. More invasive technology like DBS is also being investigated for TRD. Finally, ECT is undergoing refinements in technique to increase specificity and reduce the cognitive deficit side effects; if successful, the tolerability and patient acceptance of ECT could improve in the future. These neurostimulation techniques could prove to be more effective, more predictable, or have a more rapid onset of antidepressant activity than VNS Therapy.


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We face similar competition with respect to the development and sale of VNS Therapy as a treatment for the other disorders we are evaluating, including, but not limited to Alzheimer’s Disease, anxiety disorders and bulimia.
 
Patents, Licenses and Proprietary Rights
 
Proprietary protection for our products is important to our business. We maintain a policy of seeking method and device patents on our inventions, acquiring licenses under selected patents of third parties, and entering into invention and confidentiality agreements with our employees and consultants with respect to technology that we consider important to our business. We also rely on trade secrets, unpatented know-how and continuing technological innovation to develop and maintain our competitive position.
 
We have an exclusive license agreement with Jacob Zabara, Ph.D., a co-founder and consultant to us, pursuant to which we currently maintain exclusive licenses on five U.S. method patents (and such international counterparts as have been or may be issued) covering the VNS Therapy System for vagus nerve and other cranial nerve stimulation for the control of movement disorders (including epilepsy), neuropsychiatric disorders (including depression) and other disorders. We believe that these patents give us an advantage by limiting competition in vagus nerve stimulation to treat refractory epilepsy and TRD. The license agreement will give us coverage until expiration of the licensed patents in July 2011 for movement disorders and May 2011 for neuropsychiatric disorders. Pursuant to the license agreement, we are obligated to pay Dr. Zabara a royalty equal to 3.0% of net sales through July 2011, after which royalties will be reduced to 1.0% for the duration of any remaining patents covering licensed products.
 
We have an agreement with Mitchell S. Roslin, M.D. on two U.S. patents that we co-own with Dr. Roslin for bilateral VNS for the treatment of obesity. Pursuant to the agreement, we are obligated to pay Dr. Roslin a royalty rate of 1.0% of the first $10 million of net obesity sales covered by one of the patents and 0.5% of net obesity sales thereafter. Pursuant to the agreement, we paid Dr. Roslin advances on royalties in the amount of $25,000 per year for five years beginning January 1, 2000, and we will be obligated to pay, upon the completion of certain milestones, up to $325,000 in additional advances on royalties.
 
Including the patents referred to in the agreements described above, as of April 27, 2007, we owned or licensed 34 U.S. patents and 75 pending U.S. patent applications, covering various aspects of the VNS Therapy System, potential improvements to the VNS Therapy System and methods of treatment for a variety of disorders through electrical stimulation of the vagus nerve or other cranial nerves. In addition to movement disorders, other method patents cover the fields of eating disorders (including obesity and bulimia), endocrine disorders, migraine headaches, dementia, neuropsychiatric disorders (including depression and anxiety disorders), motility disorders, sleep disorders, coma, chronic pain, cardiac disorders and hypertension. We have filed counterparts of certain of our key U.S. patent applications in certain key international jurisdictions and currently own or license 31 patents issued by the European Patent Office or other international authorities and 48 patent applications pending in the European Patent Office or before other international authorities.
 
We cannot assure you that patents will issue from any of the pending applications or if patents issue, that they will be of sufficient scope or strength to provide meaningful protection for our technology. Notwithstanding the scope of the patent protection available to us, a competitor could develop treatment methods or devices that are not covered by our patents.
 
We believe that the patents we own and license provide us with protection in the U.S. in the field of cranial nerve stimulation, including VNS for the control of epilepsy and other movement disorders, (including Parkinson’s Disease and essential tremor), neuropsychiatric disorders (including clinical depression), eating disorders, anxiety disorders, obesity, dementia (including Alzheimer’s Disease) and additional indications for which method patents have been issued. The protection provided by our international patents is not as strong as that provided by our U.S. patents due to differences in patent laws. In particular, European and other countries prohibit patents covering methods for treatment of the human body by surgery or therapy.
 
There has been substantial litigation regarding patent and other intellectual property rights in the medical device industry. In the future, we may need to engage in litigation to enforce patents issued or licensed to us, to protect our trade secrets or know-how or to defend us against claims of infringement of the rights of others and to determine the scope and validity of the proprietary rights of others. Litigation could be costly and could divert our


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attention from other functions and responsibilities. Adverse determinations in litigation could subject us to significant liabilities to third parties, could require us to seek licenses from third parties and could prevent us from manufacturing, selling or using the VNS Therapy System, any of which could severely harm our business. We are not currently a party to any patent litigation or other litigation regarding proprietary rights and are not aware of any challenge to our patents or proprietary rights.
 
Product Liability and Insurance
 
The manufacture and sale of our products subjects us to the risk of product liability claims. We are currently named as a defendant in two product liability lawsuits alleging negligence, strict liability and breach of warranty. We likely will be named in the future as a defendant in product liability lawsuits alleging claims of negligence, strict liability, breach of warranty, negligent misrepresentation, failure to warn, wrongful death and other claims. We do not believe that the VNS Therapy System is defective or otherwise has caused or will cause injury to patients who are or may be involved in these lawsuits; however, the outcome of litigation is inherently unpredictable and could result in an adverse judgment and an award of substantial and material damages against us. We establish a liability reserve on our balance sheet in an amount less than our self-insured retention for all matters that we believe is probable of payment as a result of a judgment or settlement. Although we maintain product liability insurance in amounts that we believe to be reasonable, coverage limits may prove not to be adequate in some circumstances. Product liability insurance is expensive and in the future may be available only at significantly higher premiums or not be available on acceptable terms, if at all. A successful claim brought against us in excess of our insurance coverage could severely harm our business and consolidated results of operations and financial position.
 
We endeavor to maintain executive and organization liability insurance in a form and with aggregate coverage limits that we believe are adequate for our business purposes. On May 31, 2007, we renewed our executive and organization liability policies through May 31, 2008.
 
Employees
 
As of June 1, 2007, we had approximately 547 full-time employees. We believe that the success of our business depends, in part, on our ability to attract and retain qualified personnel. We believe our relationship with our employees is good. However, we cannot assure you that we will be successful in hiring or retaining qualified personnel. The loss of key personnel, or the inability to hire or retain qualified personnel, could significantly harm our business.
 
Financial Information About Segment and Geographical Areas
 
Our financial information, including our revenues and long-lived assets by geographical area, is included in the Consolidated Financial Statements and the related Notes beginning on page F-1.
 
Internet Website and Availability of Public Filings with the SEC
 
Our internet address is www.cyberonics.com. We make available free of charge on or through our website our annual reports on Form 10-K, quarterly reports on Form 10-Q, current reports on Form 8-K, and amendments to those reports filed or furnished pursuant to Section 13(a) or 15(d) of the Securities Exchange Act of 1934, as amended (“Exchange Act”), as soon as reasonably practicable after electronically filing such material with, or furnishing it to the SEC. Also available on our website are our corporate governance guidelines, corporate code of business conduct and ethics, financial code of ethics and charters for each standing committee of our Board of Directors.
 
Materials we file with the SEC may be read and copied at the SEC’s Public Reference Room at 100 F Street, NE, Washington, D.C. 20549. Information on the operation of the Public Reference Room may be obtained by calling the SEC at 1-800-SEC-0330. The SEC also maintains an internet website at www.sec.gov that contains reports, proxy and information statements, and other information regarding our company that we file electronically with the SEC.
 
We may from time to time provide important disclosures to investors by posting them in the investor relations section of our website, as allowed by SEC rules. Information on our website is not incorporated into this Form 10-K.


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Item 1A.   Risk Factors
 
Our common stock price constantly changes.
 
Our common stock is traded on the NASDAQ Global Market under the ticker symbol “CYBX.” The price of stock on that trading market fluctuates, and we expect that the market price of our common stock will continue to fluctuate. For example, during the fiscal year ended April 27, 2007, our stock traded from a high of $27.55 to a low of $14.70 per share. Our stock price may be affected by a number of factors, some of which are beyond our control, including, without limitation:
 
  •  changes in the general conditions of the economy;
 
  •  regulatory activities and announcements;
 
  •  federal and state enforcement initiatives related to medical device companies;
 
  •  changes in market valuations of medical device companies in general;
 
  •  national and regional coverage determinations by third-party payers, including private insurance companies, Medicare, state Medicaid programs and others;
 
  •  results of studies regarding the safety and efficacy of drugs or devices that are potential competitors to our VNS Therapy System;
 
  •  results of studies regarding the safety and efficacy of our VNS Therapy treatment for various indications including epilepsy, depression, Alzheimer’s Disease, anxiety and other disorders;
 
  •  quarterly variations in our sales and operating results;
 
  •  announcements of significant contracts, acquisitions or capital commitments;
 
  •  changes in financial estimates by securities analysts;
 
  •  additions or departures of key management personnel;
 
  •  risks and costs associated with the previously disclosed inquiries by the SEC staff and the U.S. Attorney and with any litigation relating thereto or to our stock option grants, procedures and practices;
 
  •  the impact of the restatement of our financial statements and any other actions that might be taken or required as a result of such inquiries, including a default under our credit facility or debt instruments;
 
  •  the potential identification of material weaknesses in our internal controls over financial reporting; and
 
  •  uncertainties associated with stockholder derivative litigation.
 
In addition, the stock market in recent years has experienced broad price and volume fluctuations that have often been unrelated to the operating performance of companies. These broad market fluctuations have also adversely affected, and may continue to adversely affect, the market price of our common stock.
 
We are not profitable now, and we have been profitable for only seven fiscal quarters since our inception.
 
Through April 27, 2007, we incurred an accumulated net deficit of approximately $259 million. We continue to incur substantial expenses, including:
 
  •  sales and marketing expenses related to our U.S. launch of VNS Therapy in TRD and to our re-launch of VNS Therapy in epilepsy;
 
  •  clinical expenses related to our commitment for post-market studies in the TRD indication;
 
  •  regulatory expenses related to our post-market surveillance and other regulatory obligations and manufacturing expenses; and
 
  •  general administrative expenses, including substantial expenses related to internal and governmental investigations of our stock option granting practices and procedures.


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We can provide no assurance that our revenues will grow or that our expenses will decline sufficiently to enable us to become profitable in the future. The report of our auditors with respect to their audit of our Consolidated Financial Statements for the fiscal year ended April 27, 2007 contains an explanatory paragraph relating to the preparation of our financial statements as a “going concern.” While our management expects to resolve the conditions referenced in “Note 2. Going Concern” in the Notes to the Consolidated Financial Statements, we can offer no assurance that we will be able to resolve these conditions and continue as a going concern.
 
In the future, we could have a material weakness in our internal control over financial reporting.
 
We reported in our Annual Report on Form 10-K for the fiscal year ended April 28, 2006 (“2006 Form 10-K”) that management identified a material weakness in our internal control over financial reporting. Our management concluded that, as a result of this material weakness, our internal control over financial reporting was not effective as of April 28, 2006 based upon the criteria issued by the Committee of Sponsoring Organizations of the Treadway Commission. This material weakness resulted in the material misstatement of stock-based compensation expense in our consolidated financial statements for the 2004 and 2005 fiscal years and each of the quarters of fiscal 2005 and 2006 and we restated previously issued financial statements for the 2004 and 2005 fiscal years and each of the quarters of fiscal years 2005 and 2006. We have successfully remediated this material weakness. However, if management determines or our independent registered public accountants conclude that we have a material weakness in the future, it could adversely affect our credit rating, lead to short-term price volatility, trigger an investigation by a regulatory authority or result in additional stockholder litigation, any of which could severely harm our business, our consolidated financial position and results of operations.
 
Our quarterly operating results may fluctuate in the future, which may cause our stock price to decline.
 
Our quarterly revenues, expenses and operating results may vary significantly from quarter to quarter for several reasons, including, without limitation:
 
  •  the extent to which the VNS Therapy System gains market acceptance;
 
  •  the timing of obtaining marketing approvals for the VNS Therapy System for other indications, if any;
 
  •  the existence and timing of any approvals or non-coverage determinations for reimbursement by third-party payers;
 
  •  the rate and size of expenditures incurred as we expand our clinical, manufacturing, sales, marketing and product development efforts;
 
  •  our ability to retain qualified sales personnel;
 
  •  the availability of key components, materials and contract services, which depends on our ability to forecast sales among other things;
 
  •  investigations of our business and business-related activities by regulatory or other governmental authorities;
 
  •  product recalls or safety alerts; and
 
  •  litigation, including product liability, securities class action, stockholder derivative, general commercial and other lawsuits.
 
As a result of any of these factors, our consolidated results of operations may fluctuate significantly and may be below security analyst expectations, which may in turn cause our stock price to decline.
 
We may fail to comply with one or more of the many regulations that govern our business activities.
 
We are subject to extensive and rigorous ongoing regulation of the research, development, testing, manufacture, labeling, promotion, advertising, distribution and marketing of our product. Our failure to comply with regulations or to identify and resolve manufacturing or safety problems prior to commercial marketing could lead to the need for product marketing restrictions, product withdrawal or recall or other voluntary or regulatory action, any


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of which could delay further marketing until our product is brought into compliance. Our failure to comply with these requirements could have a significant negative impact on our future operating results and may also subject us to stringent penalties and lawsuits.
 
Our indebtedness and debt service obligations may adversely affect our cash flow, cash position and stock price.
 
As of April 27, 2007, we had approximately $125.0 million in convertible debt with aggregate annual debt service obligations, excluding full repayment of principal, of approximately $3.8 million and $7.5 million in outstanding borrowings against our revolving credit facility. If we issue other securities in the future, our debt service obligations and interest expense will increase further. We intend to fulfill our debt service obligations from earnings and our existing cash and investments. In the future, if we are unable to generate cash or raise additional cash through financing sufficient to meet these obligations, we may have to delay or curtail our research, development and commercialization programs. Our indebtedness could have significant additional negative consequences, including, without limitation:
 
  •  requiring the dedication of a portion of our cash to service our indebtedness and to pay off the principal at maturity, thereby reducing the amount of our expected cash available for other purposes, including funding our research, development and commercialization efforts and planned capital expenditures;
 
  •  increasing our vulnerability to general adverse economic conditions;
 
  •  limiting our ability to obtain additional financing; and
 
  •  placing us at a possible competitive disadvantage to less leveraged competitors and competitors with better access to capital resources.
 
Upon the occurrence of a fundamental change, holders of our senior subordinated Convertible Notes may force us to purchase their Convertible Notes at the full amount owed, including accrued but unpaid interest.
 
If we undergo a fundamental change, including, but not limited to, the acquisition by any person of the beneficial ownership of 50% of our common stock, our consolidation or merger with or into any other person, our liquidation, or our common stock being removed from listing on The NASDAQ Global Market, holders of our $125.0 million of 3% Senior Subordinated Convertible Notes due in 2012 (“Convertible Notes”) may, at their option, require us to purchase their Convertible Notes for the full amount owed including accrued but unpaid interest. This amount may be greater than the value of the Convertible Notes at the time of repurchase. As a result, the possibility of a repurchase requirement may inhibit the consummation of certain transactions such as mergers that may be beneficial to our stockholders.
 
Upon the occurrence of certain events, the initial conversion rate of our Convertible Notes will be adjusted, which could result in an increased number of shares being issued upon conversion.
 
The initial conversion rate of our Convertible Notes will be adjusted upon the occurrence of certain events, including, among others, the issuance to our stockholders of certain rights to purchase our common stock at less than the current market price of our common stock or the issuance of cash dividends to substantially all of our stockholders. If the conversion rate is adjusted, holders of our Convertible Notes will receive a greater number of shares of our common stock per Convertible Note, resulting in increased percentage ownership of our common stock by the noteholders.
 
We may be forced to repay the full amount of our outstanding $125.0 million convertible note indebtedness and senior credit indebtedness on an accelerated basis.
 
In July 2006, we received a notice of default and demand letter (“Notice of Default”) from Wells Fargo Bank, National Association (the “Trustee”), pursuant to which the Trustee asserted that we were in default of our obligations under the Indenture dated September 27, 2005 (“Indenture”), between us, as issuer, and the Trustee with respect to our Convertible Notes, as a result of our failure (1) to file with the SEC our 2006 Form 10-K by July 12, 2006 and (2) to deliver a copy of the 2006 Form 10-K to the Trustee by July 27, 2006. In October 2006, we received a notice of


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acceleration and demand letter (“Notice of Acceleration”) from the Trustee informing us that, pursuant to the Indenture, the Trustee has declared the Convertible Notes due and payable at their principal amount together with accrued and unpaid interest, and fees and expenses and demanding that all such principal, interest, fees and expenses under the Convertible Notes be paid to the Trustee immediately. As a result, although the Convertible Notes mature in 2012, we have included them as a current liability on our Consolidated Balance Sheet as of April 27, 2007. We deny that a default occurred under the Indenture, and on June 13, 2007, a federal district court granted summary judgment to Cyberonics and declared that no default occurred under the Indenture. In its court filings, the Trustee stated that it was seeking approximately $20.0 million in damages plus interest and attorney fees, but it reserved the right to seek immediate payment of full value of the Convertible Notes. The Trustee has not appealed the district court’s decision; however, if the Trustee appeals the decision of the district court, and if the court of appeals reverses the district court’s decision and determines that a default occurred, then all unpaid principal and accrued interest on the outstanding Convertible Notes could be due and payable immediately unless we negotiate an amendment to the terms of the Indenture. In addition, a default under the Indenture constitutes a default under our Credit Agreement dated January 13, 2006 (“Credit Agreement”) with Merrill Lynch Capital, a division of Merrill Lynch Business Financial Services Inc. (“Administrative Agent”) and the lenders who are party thereto (“Lenders”). If the principal and accrued interest on the outstanding Convertible Notes and our outstanding indebtedness under the credit agreement must be repaid immediately, we may not have or be able to obtain access to the funds needed to repay the indebtedness, and we may be forced to seek protection under the U.S. Bankruptcy Code.
 
We may not be able to access sufficient additional capital sources or to access capital on terms which are acceptable to us.
 
Our capital requirements are substantial and depend on many factors, including market acceptance of our product and clinical and strategic development opportunities. A large portion of our expenses is currently fixed, including expenses related to our facilities, equipment and personnel, and we may need to spend significant amounts to conduct our post-marketing clinical studies or for product improvement and development. We will need to generate significant additional revenues to achieve profitability in the future. Even if we do achieve profitability, we may not be able to increase profitability on a quarterly or annual basis. Furthermore, if additional capital is required, we may not be able to access sufficient sources or to access capital on terms which are acceptable to us.
 
We may not be successful in our efforts to develop VNS Therapy for the treatment of other indications and, as such, we may not experience revenue growth from these other indications.
 
We have conducted or supported animal studies or small human pilot studies for the treatment of a number of therapeutic indications beyond refractory epilepsy and TRD. Regulatory approval for any likely new indications would require us to conduct one or more larger scale pivotal trials. We have not conducted such pivotal trials for any indication beyond refractory epilepsy and TRD, nor do we have any immediate plans to do so. In the event that we do invest in future studies for new indications, we cannot assure you that our study results will be positive. If we elect not to conduct research with regard to new indications, our study results are not positive, we do not receive additional regulatory approvals, or alternative indications do not prove to be commercially viable, our revenue growth, if any, would be limited to revenue from our existing approved indications in refractory epilepsy and TRD.
 
We may not be able to expand or maintain market acceptance of the use of the VNS Therapy System to treat epilepsy or depression, which could cause our sales to be lower than expectations.
 
Our product portfolio is limited to VNS Therapy Systems for two indications, refractory epilepsy and TRD. Market acceptance of the VNS Therapy System for these indications depends on our ability to convince the medical community and third-party payers of the clinical efficacy and safety of vagus nerve stimulation and the VNS Therapy System. On May 4, 2007, CMS issued a national non-coverage determination with respect to VNS Therapy for TRD. Prior to the non-coverage determination, some patients were able to obtain coverage on a case-by-case basis through their local Medicare contractor or Fiscal Intermediary. Since the national non-coverage determination is binding on all local Medicare contractors, patients will no longer be able to obtain Medicare coverage on a case-by-case basis. In addition, CMS’s non-coverage determination may have a detrimental effect on coverage decisions by other payers, including Medicaid. While the VNS Therapy System has been implanted in more than


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45,000 patients, many physicians are still unfamiliar with this form of therapy. We believe that existing pharmacological therapies, surgery (for refractory epilepsy) and ECT (for TRD) are the only other approved and currently available therapies competitive with the VNS Therapy System. These therapies may be more attractive to patients or their physicians than the VNS Therapy System in terms of efficacy, cost or reimbursement availability. Furthermore, we have not funded significant post-market clinical research that could change physicians’ opinions or use of our product for refractory epilepsy. We cannot assure you that we will receive broad reimbursement coverage for TRD or that our sales will increase for epilepsy or TRD. Additionally, we cannot assure you that the VNS Therapy System will achieve expanded market acceptance for the treatment of epilepsy, depression or for any other indication. Failure of the VNS Therapy System to gain additional market acceptance would severely harm our business, our consolidated financial position and results of operations.
 
We may not be successful in our marketing and sales efforts, which could severely harm our business.
 
We launched VNS Therapy for TRD in August 2005 following expansion of our sales and case management organization to support anticipated sales demand in both epilepsy and TRD markets. Although patient demand has been strong, our sales have not increased to the extent we anticipated in August 2005. At the present time, we do not expect sales of the VNS Therapy System for TRD to result in any consistent revenue growth until the product receives broader regional or national coverage by insurers and other payers. In addition, the absence of broad regional or national insurance coverage may have a negative effect on psychiatrists’ prescribing habits, resulting in decreasing sales of VNS Therapy Systems for TRD. Our inability to achieve annual or quarterly revenue growth could substantially harm our consolidated results of operations and financial position.
 
Patient confidentiality and federal and state privacy and security laws and regulations may adversely impact our selling model.
 
The Health Insurance Portability and Accountability Act of 1996 (“HIPAA”) establishes federal rules protecting the privacy and security of personal health information. The privacy and security rules address the use and disclosure of individual health care information and the rights of patients to understand and control how such information is used and disclosed. HIPAA provides both criminal and civil fines and penalties for covered entities that fail to comply with HIPAA. We intend to comply with applicable privacy and security standards. However, if we fail to comply with the applicable regulations, we could suffer civil penalties up to $25,000 per calendar year for each violation and criminal penalties with fines up to $250,000 and potential imprisonment. In addition to HIPAA, virtually every state has enacted one or more laws to safeguard privacy, and these laws vary significantly from state to state and change frequently. Even if our business model is compliant with the HIPAA Privacy and Security Rule and the Texas privacy laws, it may not be compliant with the privacy laws of all states. Because the operation of our business involves the collection and use of substantial amounts of “protected health information,” we endeavor to conduct our business as a “covered entity” under the HIPAA Privacy and Security Rule and consistent with the Texas privacy laws, obtaining HIPAA-compliant patient authorizations where required to support the collection and use of patient information. We also sometimes act as a “business associate” for a covered entity. Despite extensive efforts to conduct our business as a covered entity under the HIPAA Privacy and Security Rules, the Office for Civil Rights of the Department of Health and Human Services or another government enforcement agency may determine that our business model or operations are not in compliance with the HIPAA Privacy and Security Rules, which could subject us to penalties, could severely limit our ability to market and sell VNS Therapy under our existing business model and could harm our business growth and consolidated financial position.
 
We may be unable to obtain and maintain adequate third-party reimbursement on our product, which could have a significant negative impact on our future operating results.
 
Our ability to commercialize the VNS Therapy System successfully depends, in part, on whether third-party payers, including private healthcare insurers, managed care plans, Medicare and Medicaid programs and others, agree to cover the VNS Therapy System and associated procedures and services and to reimburse at adequate levels for the costs of the VNS Therapy System and the related services in the U.S. or internationally. While we currently have reimbursement approval for epilepsy, we have not yet received substantial reimbursement coverage approval for the treatment of depression. In May 2007, CMS issued a national non-coverage determination with respect to VNS Therapy for TRD.


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This non-coverage determination means that Medicare will not cover VNS Therapy for TRD. Prior to the non-coverage determination, some patients were able to obtain coverage on a case-by-case basis through their local Medicare contractor or Fiscal Intermediary. Since the national non-coverage determination is binding on all local Medicare contractors, patients will no longer be able to obtain Medicare coverage on a case-by-case basis. In addition, the CMS non-coverage determination also may have a detrimental effect on potential and existing coverage by Medicaid and private payers. In addition, periodic changes to reimbursement methodology for medical devices under the Medicare and Medicaid programs occur and may reduce the rate of increase in federal expenditures for health care costs. Such changes, as well as any future regulatory changes and the failure of the VNS Therapy System to continue to qualify for reimbursement under these programs, may have an adverse impact on our business.
 
Healthcare, as one of the largest industries in the U.S., continues to attract substantial legislative interest and public attention. Congress and state legislatures are constantly reassessing the propriety of coverage for various health services and the payment level for such services. Certain reform proposals and other policy shifts, if enacted, could limit coverage for VNS Therapy or the reimbursement available for VNS Therapy from governmental agencies or third-party payers. Changes in Medicare, Medicaid and other programs, cost-containment initiatives by public and private payers, a failure to obtain substantial regional and national coverage policies for VNS Therapy in TRD, and proposals to limit payments and health care spending could have a significant negative impact on our future operating results.
 
Our current and future expense estimates are based, in large part, on estimates of our future sales, which are difficult to predict.
 
We may be unable to, or may elect not to, adjust spending quickly enough to offset any unexpected sales shortfall. If increased expenses are not accompanied by increased sales, our consolidated results of operations and financial position for any particular quarter could be harmed.
 
If our suppliers and manufacturers are unable to meet our demand for materials, components and contract services, we may be forced to qualify new vendors or change our product design, which would impair our ability to deliver products to our customers on a timely basis.
 
We rely upon sole source suppliers for certain of the key components, materials and contract services used in manufacturing the VNS Therapy System. We periodically experience discontinuation or unavailability of components, materials and contract services, which may require us to qualify alternative sources or, if no such alternative sources are identified, change our product design. We believe that pursuing and qualifying alternative sources and/or redesigning specific components of the VNS Therapy System, if or when necessary, could consume significant resources. In addition, such changes generally require regulatory submissions and approvals. Any extended delays in or an inability to secure alternative sources for these or other components, materials and contract services could result in product supply and manufacturing interruptions, which could significantly harm our business.
 
Our products may have defects that result in product recalls, which may result in substantial costs and reduced sales.
 
The VNS Therapy System includes an electronic pulse generator and lead designed to be implanted in the human body and a programming wand connected to a handheld computer for programming the pulse generator. Component failures, manufacturing or shipping problems or hardware or software design defects could result in the product not delivering the therapy for which it is indicated or the product delivering a therapy that is not intended. The occurrence of such problems or other adverse clinical reactions could result in a recall of our products, possibly requiring explantation and potential reimplantation of the VNS Therapy System, which may increase risk to the patient. Any product recall could result in a substantial loss of physician and patient confidence in our products, with a consequential substantial decrease in sales, and could result in substantial product liability litigation, with liabilities well in excess of our product liability insurance coverage limits, any or all of which could severely harm our business and our consolidated financial position and results of operations.
 
In November 2006, we sent physicians a safety alert letter warning of a rare software anomaly that can cause the VNS Therapy System pulse generator to deliver an output current of eight milliamps during an interrupted programming session. This amount of output current is within the range of currents originally approved by the FDA


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as safe and effective, but it is higher than is recommended for use. We are aware of eight occurrences of this anomaly, among more than 45,000 VNS Therapy Systems implanted. Although none of the occurrences was associated with permanent injury to a patient, most resulted in at least temporary discomfort. FDA has classified this anomaly as a Class II recall, which we have addressed by means of the safety alert letter. If we fail to follow up appropriately regarding distribution of the safety alert letter, we could be subject to regulatory sanctions.
 
We may not be able to protect our technology from unauthorized use, which could diminish the value of our products and impair our ability to compete.
 
Our success depends upon our ability to obtain and maintain patent and other intellectual property protection for the VNS Therapy System and its improvements. To that end, we have acquired licenses under certain patents and have patented and intend to continue to seek patents on our own inventions used in our products and treatment methods. The process of seeking patent protection can be expensive and time consuming, and we cannot assure you that patents will be issued from our currently pending or future applications or that, if patents are issued, they will be of sufficient scope or strength to provide meaningful protection of our technology or any commercial advantage to us. Further, the protection offered by the licensed international patents is not as strong as that offered by the licensed U.S. patents due to differences in patent laws. In particular, the European Patent Convention prohibits patents covering methods for treatment of the human body by surgery or therapy. Without effective patent protection, whether in the U.S. or abroad, we may be subject to competition that negatively affects our business and our consolidated financial position and results of operations.
 
We may engage in litigation to protect our proprietary rights, or defend against infringement claims by third parties, causing us to suffer significant liabilities or expenses or preventing us from selling our products.
 
There has been substantial litigation regarding patent and other intellectual property rights in the medical device industry. Litigation, which could result in substantial cost to and diversion of effort by us, may be necessary to enforce patents issued or licensed to us, to protect trade secrets or know-how owned by us or to defend ourselves against claimed infringement of the rights of others and to determine the scope and validity of the proprietary rights of others. Adverse determinations in litigation could subject us to significant liabilities to third parties, could require us to seek licenses from third parties and could prevent us from manufacturing, selling or using the VNS Therapy System, any of which could severely harm our business.
 
Intense competition and rapid technological changes could reduce our ability to market our products and achieve sales.
 
We believe that existing and future pharmaceutical therapies will continue to be the primary competition for the VNS Therapy System. We may also face competition from other medical device companies that have the technology, experience and capital resources to develop alternative devices for the treatment of epilepsy and depression. Medtronic, Inc., for example, continues to conduct clinical studies involving an implantable signal generator used with an invasive deep brain probe, or thalamic stimulator, for the treatment of neurological disorders, including depression, and has received FDA approval for the device for the treatment of essential tremor, including that associated with Parkinson’s Disease. Many of our competitors have substantially greater financial, manufacturing, marketing and technical resources than we do and have obtained third-party reimbursement approvals for their therapies. We may not have invested in the past, or be investing in the future, sufficient resources in engineering research and development to prepare the VNS Therapy System for competition in the future with other neurostimulation technologies. In addition, the healthcare industry is characterized by extensive research efforts and rapid technological progress. Our competitors may develop technologies and obtain regulatory approval for products that are more effective in treating epilepsy and depression than our current or future products. In addition, advancements in surgical techniques may make surgery a more attractive therapy for epilepsy and depression. The development by others of new treatment methods with novel drugs, medical devices or surgical techniques for epilepsy and depression could render the VNS Therapy System non-competitive or obsolete. We may not be able to compete successfully against current and future competitors, including new products and technology, which could severely harm our business and our consolidated financial position and results of operations.


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We are subject to claims of product liability and we may not have the resources or insurance to cover the cost for losses under these claims.
 
The manufacture and sale of the VNS Therapy System, an implantable medical device, entails the risk of product liability claims, which we have received from time to time in the ordinary course of business. We may be responsible for large self-insured retentions for each claim, and our product liability coverage limit may not be adequate to pay defense costs and judgments that may result from these claims. Product liability insurance is expensive and in the future may only be available at significantly higher premiums or may not be available on acceptable terms, if at all. A successful claim brought against us in excess of our insurance coverage could significantly harm our business and consolidated financial position.
 
If we do not continue to comply with changing government laws and regulations, we could lose our ability to market and sell our product or be subject to substantial fines or other penalties.
 
The preclinical and clinical design, testing, manufacturing, labeling, sale, distribution, servicing and promotion of the VNS Therapy System are subject to extensive and rigorous federal and state laws and regulations, including regulations from the Department of Health and Human Services (related to Medicare, Medicaid, HIPAA and FDA) and from comparable state agencies. In the future, it will be necessary for us to obtain additional government approvals for other indications of the VNS Therapy System, if we choose to develop new indications, and for modified or future-generation products. It is also necessary for us to ensure that our marketing and sales practices comply with all laws and regulations. Commercial distribution in certain foreign countries is also subject to regulatory approvals from the appropriate authorities in such countries. The process of obtaining FDA and other required regulatory approvals is lengthy, expensive and uncertain. Moreover, regulatory approvals may include regulatory restrictions on the indicated uses for which a product may be marketed. Failure to comply with applicable regulatory requirements can result in, among other things, fines, suspension or withdrawal of approvals, confiscations or recalls of products, operating restrictions and criminal prosecution. Adverse results in post-approval studies may result in limitations on or withdrawal of previously granted approvals. Furthermore, changes in existing regulations or adoption of new regulations could prevent us from obtaining, or affect the timing of, future regulatory approvals. We may not be able to obtain additional future regulatory approvals on a timely basis or at all. Delays in receipt of or failure to receive such future approvals, suspension or withdrawal of previously received approvals or recalls of the VNS Therapy System could severely harm our ability to market and sell our current and future products and improvements. As a condition of approval for the TRD indication, the FDA has required us to conduct a post-approval 460-patient dosing study and a 2,000-patient registry of which 1,000 will be treated with VNS Therapy. The results of these studies may be included in product labeling. If we fail to complete these studies in a timely manner, we may be subject to regulatory action, including withdrawal of our TRD indication approval.
 
We are subject to federal and state laws governing our sales and marketing practices, and failure to adhere to these laws could result in substantial fines and other penalties.
 
We are subject to certain laws and regulations, including the federal Anti-Kickback Statute, the federal False Claims Act and the HIPAA Privacy Rule, that govern the sales and marketing practices of healthcare companies. The Anti-Kickback Statute contains both civil and criminal sanctions, which are enforced by the Office of the Inspector General of Health and Human Services Department (“OIG”) and the U.S. Department of Justice (“DOJ”). Over the past several years, the U.S. government has accused an increasing number of pharmaceutical and medical device manufacturers of violating the Anti-Kickback Statute based on certain marketing and sales practices and compensation arrangements with referral sources. Pharmaceutical and medical device manufacturers also have been accused of alleged violations of the federal False Claims Act, which imposes civil liability (including substantial monetary penalties and damages) on any person or corporation that (1) knowingly presents a false or fraudulent claim for payment to the U.S. government, (2) knowingly uses a false record or statement to obtain payment or (3) engages in a conspiracy to defraud the federal government to obtain allowance for a false claim. Under the qui tam, or whistleblower, provisions of the False Claims Act, private parties may bring actions on behalf of the U.S. government. These private parties are entitled to share in any amounts recovered by the government through trial or settlement. Both direct enforcement activity by the government and whistleblower lawsuits have increased significantly in recent years and have increased the risk that we may be forced to defend a prosecution under the Anti-Kickback Statute, a


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false claims action, be liable for monetary fines or be excluded from the Medicare and Medicaid programs as a result of an investigation resulting from an enforcement action or a whistleblower case.
 
In 2004, we adopted a healthcare law compliance program, including our Business Practice Standards, which is a set of policies that embody the AdvaMed Code of Ethics for Interactions with Health Care Professionals. In January 2006, we adopted significant revisions to our Business Practice Standards that we believe more thoroughly address our compliance risks. We endeavor to conduct our business in compliance with our Business Practice Standards and to ensure continued compliance through regular education of our employees, audits of employee activities, and appropriate responses to violations of the Business Practice Standards. Although we believe that these efforts have been successful and that we are in substantial compliance with our policies and the healthcare laws, given the complexity of our business model, including extensive interactions with patients and healthcare professionals, and the large number of field personnel employed by us, violations of our policy and the law could occur. We could be subject to investigation by the OIG or the DOJ or a comparable state agency. If investigated, we could be forced to incur substantial expense responding to the investigation and defending our actions. If unsuccessful in our defense, we could be found to be in violation of the healthcare laws and be subject to substantial fines and penalties, including exclusion of our products from Medicare and Medicaid reimbursement.
 
Our international operations are subject to risks not generally associated with commercialization efforts in the U.S.
 
We may not be successful in increasing our international sales or in obtaining reimbursement or any regulatory approvals required in foreign countries. The anticipated international nature of our business is also expected to subject us and our representatives, agents and distributors to laws and regulations of the foreign jurisdictions in which we operate or where the VNS Therapy System is sold. The regulation of medical devices in a number of such jurisdictions, particularly in the European Union, continues to develop and new laws or regulations may impair our ability to market and sell our products in those jurisdictions.
 
Our failure to attract and retain qualified personnel, including key officers, could adversely affect our operations.
 
In connection with the commercialization of the VNS Therapy System in the U.S. for TRD, we made significant changes to our organization, including an initial scale up in personnel from February 2005 through July 2005 of approximately 50% and subsequent reductions in personnel of 11% in fiscal 2006 and 15% in fiscal 2007. Such activities have placed, and may continue to place a significant strain on our resources and operations. Our ability to grow in the future will depend upon our ability to attract, hire and retain highly qualified employees and management personnel. We compete for such personnel with other companies, academic institutions, government entities and other organizations and we may not be successful in hiring or retaining qualified personnel. In November 2006, the Chief Executive Officer and Chief Financial Officer resigned, and in May 2007 we hired a new Chief Executive Officer and our Interim Chief Financial Officer resigned. These changes in key management positions strain our existing resources, creating a risk of loss of other key employees. As a result, our business could be affected detrimentally.
 
We have in the past and are again now involved in an investigation conducted by the Staff of the Senate Finance Committee resulting in adverse publicity, expenditure of substantial resources and diversion of management attention, all with an adverse effect on our business.
 
We received a letter in November 2006 and a second letter in March 2007 from Senator Charles Grassley on behalf of the United States Senate Committee on Finance (“SFC”) requesting our cooperation in providing certain documents and information relating to (1) our employees, agents and consultants regarding their meetings and communications with the CMS regarding coverage of the VNS Therapy System for TRD and (2) our agents’ and consultants’ participation in presentations, preparation of publications and advice to government agencies on VNS Therapy for TRD. A discussion of the SFC investigation is contained in “Note 15. Litigation — Senate Finance Committee Investigation.” We are unable to provide assurance at this time as to any further action that may be taken by the SFC or its staff in regard to this matter. Any further action taken by the SFC or its staff could have a material adverse effect on our business, including but not limited to increased expense to comply with requests and diversion of management attention from the conduct of our business.


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We have been named in a putative securities class action lawsuit.
 
We and certain of our officers have been named as defendants in a putative class action lawsuit. A discussion of this lawsuit is contained in “Note 15. Litigation — Securities Class Action Lawsuit.” Although it is not possible at this early stage to predict the likely outcome of this lawsuit, an adverse result could have a material adverse effect on us, our consolidated financial position, results of operations and cash flows. Even if the result of such litigation is not adverse, the cost of defending against such litigation has been and will continue to be expensive and could have a material adverse effect on our consolidated financial position.
 
We are the subject of governmental investigations related to our stock option granting practices and procedures and other matters, the outcome of which could adversely affect our business.
 
In June 2006, the SEC staff advised us that it had commenced an informal inquiry of our stock option grants and related practices, procedures and accounting. In June 2006, we also received a subpoena from the U.S. Attorney requesting documents related to the same matters. In October 2006, the SEC staff made an additional request for certain documents and information related to our revised guidance on February 8, 2006 and our financial results announced on May 1, 2006, our sales for the quarter ended April 28, 2006, coverage or potential coverage of our VNS Therapy System by Alabama BlueCross BlueShield and Aetna and the aging of our accounts receivable since January 1, 2003. We are cooperating with these governmental investigations. A more detailed discussion of these matters is contained in “Note 15. Litigation — Governmental Investigations of Options Granting Practices.” Although it is not possible at this early stage to predict the likely outcome of these inquiries, an adverse result could have a material adverse effect on us, our consolidated financial position, results of operations and cash flows. Even if the result of such inquiries is not adverse, the cost of defending against such inquiries has been and will continue to be expensive and could have a material adverse effect on our consolidated financial position.
 
We are named as a nominal defendant in six stockholder derivative lawsuits which, as a result of our indemnity obligations to the current and former officers and directors named as defendants, could be costly to us.
 
A discussion of the pending stockholder derivative claims is contained in “Note 15. Litigation — Stockholder Derivative Litigation.” Our bylaws require us to advance fees and expenses to officers and directors in certain situations. The advancement of fees and expenses to officers and directors, both current and former, to defend the stockholder derivative claims could be costly and could have a material adverse effect on our consolidated financial position.
 
Item 1B.   Unresolved Staff Comments
 
We have previously disclosed that we are subject to an inquiry by the SEC relating to our accounting for stock option grants. To date, we have not received written comments by the SEC regarding any of our periodic or current reports filed under the Exchange Act, as amended, not less than 180 days before the fiscal year ended April 27, 2007 that remain unresolved.
 
Item 2.   Properties
 
We have agreed to lease approximately 143,000 square feet of office and manufacturing space in Houston, Texas through December 2009. We have also agreed to lease approximately 17,000 square feet in sales offices in Europe through April 2010. All leased properties have been expanded to accommodate expected growth in our domestic and international businesses.
 
Item 3.   Legal Proceedings
 
For a description of our material pending legal and regulatory proceedings and settlements, see “Note 15. Litigation.”
 
Item 4.   Submission of Matters to a Vote of Security Holders
 
Two matters were submitted to a vote at our annual meeting of stockholders held on February 1, 2007: (1) the election of directors to the Cyberonics’ Board of Directors and (2) the ratification of the selection of KPMG LLP as Cyberonics’ independent registered public accounting firm for the fiscal year ending April 27, 2007.


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In the election of directors, Guy C. Jackson received 21,211,392 votes for election and 90,799 votes were withheld from voting for Mr. Jackson; Hugh M. Morrison received 21,215,224 votes for election and 86,967 votes were withheld from voting for Mr. Morrison; Alfred J. Novak received 14,924,461 votes for election and 1,370,777 votes were withheld from voting for Mr. Novak; Alan Olsen received 21,236,043 votes for election and 66,148 votes were withheld from voting for Mr. Olsen; Arthur L. Rosenthal received 16,072,226 votes for election and 223,012 votes were withheld from voting for Mr. Rosenthal; Jeffrey E. Schwartz received 16,228,014 votes for election and 67,224 votes were withheld from voting for Mr. Schwartz; Michael J. Strauss, M.D., M.P.H. received 21,235,263 votes for election and 66,928 votes were withheld from voting for Dr. Strauss; and Reese S. Terry, Jr. received 21,235,799 votes for election and 66,392 votes were withheld from voting for Mr. Terry. There were no broker non-votes for the election of directors.
 
On the proposal to ratify the selection of KPMG LLP as our independent registered public accounting firm for the fiscal year ending April 27, 2007, 19,178,345 votes were received for approval of the proposal, 850,175 votes were received against approval of the proposal and holders of 1,273,671 shares abstained from voting on this proposal. There were no broker non-votes on this proposal.
 
On April 24, 2007, our Board appointed Daniel J. Moore as President, Chief Executive Officer and member of the Board effective on May 1, 2007, subject to his execution of an employment agreement prior to May 5, 2007. We executed an employment agreement with Mr. Moore on April 26, 2007 and he joined our Board on May 1, 2007.
 
PART II
 
Item 5.   Market for Registrant’s Common Equity, Related Stockholder Matters and Issuer Purchases of Equity Securities
 
Our common stock is quoted on The NASDAQ Global Market under the symbol “CYBX.” The high and low sale prices for our common stock during fiscal years 2006 and 2007 are set forth below. Price data reflect actual transactions, but do not reflect mark-ups, mark-downs or commissions.
 
                 
    High     Low  
 
Fiscal Year Ended April 28, 2006
               
First Quarter
  $ 47.77     $ 32.70  
Second Quarter
    40.69       26.63  
Third Quarter
    35.30       26.88  
Fourth Quarter
    30.96       22.61  
Fiscal Year Ended April 27, 2007
               
First Quarter
    27.16       19.74  
Second Quarter
    21.64       14.70  
Third Quarter
    27.55       17.30  
Fourth Quarter
    23.02       17.62  
 
As of June 22, 2007, according to data provided by our transfer agent, there were 387 stockholders of record.
 
During fiscal 2006 and 2007, we did not pay any cash dividends to our stockholders. We currently intend to retain future earnings to fund the development and growth of our business and, therefore, do not anticipate paying cash dividends within the foreseeable future. Any future payment of dividends will be determined by our Board of Directors and will depend on our consolidated financial position and results of operations and other factors deemed relevant by our Board of Directors. In addition, the credit agreement restricts us from issuing dividends if we are in default of any term of the agreement or if after paying the dividend, we should not be in compliance with the financial covenants of the agreement.
 
For a discussion of the securities authorized under our equity compensation plans, see “Item 12. Security Ownership of Certain Beneficial Owners and Management and Related Stockholder Matters.”


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Item 6.  Selected Financial Data
 
The following table summarizes certain selected financial data and is qualified by reference to, and should be read in conjunction with the Consolidated Financial Statements and related Notes and with “Item 7. Management’s Discussion and Analysis of Financial Condition and Results of Operations” included in this Form 10-K. The selected financial data and the related Notes for the 52 weeks ended April 27, 2007, April 28, 2006 and April 29, 2005 is derived from consolidated financial statements that are included in this Form 10-K. The selected financial data for the 53 weeks ended April 30, 2004 and 52 weeks ended April 25, 2003 is derived from unaudited financial statements that are not included in this Form 10-K.
 
                                         
    52 Weeks Ended     53 Weeks Ended     52 Weeks Ended  
    April 27,
    April 28,
    April 29,
    April 30,
    April 25,
 
    2007     2006     2005     2004     2003  
 
Consolidated Statement of Operations Data:
                                       
Net sales
  $ 130,968,437     $ 123,441,575     $ 103,442,570     $ 110,721,499     $ 104,466,998  
Cost of sales
    18,258,374       15,822,045       15,674,040       16,386,487       16,202,831  
                                         
Gross profit
    112,710,063       107,619,530       87,768,530       94,335,012       88,264,167  
Operating expenses:
                                       
Selling, general and administrative
    134,144,315       137,310,196       86,972,068       72,198,977       70,480,847  
Research and development
    28,092,243       29,541,707       20,092,810       17,582,527       18,376,484  
                                         
Total operating expenses
    162,236,558       166,851,903       107,064,878       89,781,504       88,857,331  
                                         
Earnings (loss) from operations
    (49,526,495 )     (59,232,373 )     (19,296,348 )     4,553,508       (593,164 )
Interest income
    4,649,394       3,211,956       1,072,488       469,924       471,213  
Interest expense
    (5,913,119 )     (3,018,969 )     (444,270 )     (565,702 )     (413,192 )
Other income (expense), net
    (311,112 )     69,460       84,736       390,997       572,851  
                                         
Earnings (loss) before income taxes
    (51,101,332 )     (58,969,926 )     (18,583,394 )     4,848,727       37,708  
Income tax expense
    78,775       99,266       26,113       230,789       129,563  
                                         
Net earnings (loss)
  $ (51,180,107 )   $ (59,069,192 )   $ (18,609,507 )   $ 4,617,938     $ (91,855 )
                                         
Basic earnings (loss) per share
  $ (2.01 )   $ (2.37 )   $ (0.77 )   $ 0.20     $ (0.00 )
Diluted earnings (loss) per share
  $ (2.01 )   $ (2.37 )   $ (0.77 )   $ 0.18     $ (0.00 )
                                         
Shares used in computing basic earnings (loss) per share
    25,514,232       24,916,938       24,036,736       22,921,031       22,034,651  
Shares used in computing diluted earnings (loss) per share
    25.514,232       24,916,938       24,036,736       25,954,640       22,034,651  
                                         
Consolidated Balance Sheet Data
(as of Year End):
                                       
Cash, cash equivalents and marketable securities
  $ 84,804,876     $ 92,355,071     $ 61,475,892     $ 58,363,731     $ 43,576,305  
Total assets
    137,644,883       152,300,284       98,855,397       94,296,524       75,115,312  
Convertible Notes
    125,000,000       125,000,000                    
Line of credit
    7,500,000       2,500,000       3,000,000       10,031,000       8,370,000  
Long-term obligations
    295,184       1,148,457       209,928             141,066  
Accumulated deficit
    (258,646,256 )     (207,466,149 )     (148,396,957 )     (129,787,450 )     (134,405,388 )
Common stockholders’ equity (deficit)
    (16,062,229 )     4,629,866       75,595,841       68,980,479       48,512,003  
 
As discussed in “Note 10. Stock Incentive and Purchase Plans” in the Notes to the Financial Statements, we adopted SFAS 123 (revised 2004) “Share-Based Payment” (“SFAS 123(R)”) effective April 29, 2006. As a result, we recognized non-cash compensation expenses during fiscal 2007 in the amount of $19.4 million. See “Note 10. Stock Incentive and Purchase Plans” in the notes to the Financial Statements for additional information.


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Item 7.   Management’s Discussion and Analysis of Financial Condition and Results of Operations
 
You should read the following discussion and analysis together with “Item 6. Selected Financial Data” and our Consolidated Financial Statements and the related Notes.
 
This discussion contains forward-looking statements based on our current expectations, assumptions, estimates and projections about our industry and us. For a discussion of the risks and uncertainties affecting these statements, see “Cautionary Statement about Forward-Looking Statements” as well as “Item 1. Business” and “Item 1A. Risk Factors” in this Form 10-K. We undertake no obligation to update publicly any forward-looking statements, even if new information becomes available or other events occur in the future.
 
This item provides material historical and prospective disclosures enabling investors and other users to assess our consolidated financial position and results of operations. The Consolidated Financial Statements, excluding the related Notes, include the consolidated statements of operations, consolidated balance sheets, consolidated statements of stockholders’ equity (deficit) and comprehensive loss and consolidated statements of cash flows. The Notes are an integral part of the Consolidated Financial Statements and provide additional information required to fully understand the nature of amounts included in the Consolidated Financial Statements.
 
Going Concern
 
The accompanying Consolidated Financial Statements have been prepared assuming that we will continue as a going concern. Since inception, we have incurred an accumulated deficit of approximately $259 million. We have incurred substantial expenses, primarily for research and development activities that include product and process development, clinical trials and related regulatory activities, sales and marketing activities, manufacturing start-up costs and systems infrastructure. For the fiscal years ended April 27, 2007 and April 28, 2006 we had a net loss of $51 million and $59 million, respectively. To fund our operations, in fiscal 2006, we incurred additional indebtedness through the issuance of $125 million of Convertible Notes and the establishment of a $40 million line of credit.
 
In July 2006, we received the Notice of Default from the Trustee, pursuant to which the Trustee asserted that we were in default of our obligations under the Indenture with respect to our Convertible Notes as a result of our failure (1) to file with the SEC our 2006 Form 10-K by July 12, 2006 and (2) to deliver a copy of the 2006 Form 10-K to the Trustee by July 27, 2006. In October 2006, we received the Notice of Acceleration from the Trustee informing us that, pursuant to the Indenture, the Trustee declared the Convertible Notes due and payable at their principal amount together with accrued and unpaid interest, and fees and expenses and demanding that all such principal, interest, fees and expenses under the Convertible Notes be paid to the Trustee immediately. We believe that no default occurred under the Indenture, and on June 13, 2007, a federal district court granted summary judgment to Cyberonics and declared that no default occurred under the Indenture. In its court filings, the Trustee stated that it was seeking approximately $20.0 million in damages plus interest and attorney fees, but it reserved the right to seek immediate payment of full value of the Convertible Notes. The Trustee has not appealed the district court’s decision; however, if the Trustee appeals the decision of the district court and if the court of appeals reverses the district court’s decision, then all unpaid principal and accrued interest on the outstanding Convertible Notes could be due and payable immediately. Accordingly, until this matter is resolved, we have included them as a current liability on our Consolidated Balance Sheets as of April 27, 2007 and April 28, 2006. In addition, if a default occurred under the Indenture, we would also be in default of the $40.0 million Line of Credit. If principal and interest on our indebtedness must be repaid immediately, we do not have the cash resources available to repay the debt. If we were not able to renegotiate the terms of the Indenture, or to secure additional financing, this could raise substantial doubt regarding our ability to continue as a going concern. The accompanying consolidated financial statements do not include any adjustments that might result from the outcome of this uncertainty.
 
Business Overview
 
We are a neuromodulation company founded to design, develop and bring to market medical devices that provide a unique therapy, VNS Therapy, for the treatment of epilepsy, TRD and other debilitating neurological, psychiatric diseases and other disorders. The FDA approved the VNS Therapy System in July 1997 for use as an adjunctive therapy in patients over 12 years of age in reducing the frequency of partial onset seizures that are


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refractory or resistant to antiepileptic drugs. Regulatory bodies in Canada, Europe, South America, Africa, India, Australia and certain countries in Eastern Asia have approved VNS Therapy for the treatment of epilepsy without age restrictions or seizure-type limitations. FDA also approved the VNS Therapy System for the adjunctive long-term treatment of chronic or recurrent depression for patients 18 years of age or older who are experiencing a major depressive episode and have not had an adequate response to four or more adequate anti-depressant treatments. Regulatory bodies in the European Union countries and Canada approved the VNS Therapy System for the treatment of chronic or recurrent depression in patients who are in a treatment-resistant or in a treatment-intolerant depressive episode without age restrictions.
 
Our ability to expand successfully the commercialization of the VNS Therapy System depends on obtaining and maintaining favorable coverage, coding and reimbursement for the implant procedure and follow-up care. Currently, we have broad coverage, coding and reimbursement for VNS Therapy for the treatment of epilepsy. We are actively pursuing favorable coverage decisions to expand reimbursement to include VNS Therapy for TRD. Absent favorable national and regional coverage policies, we have been obtaining certain TRD case-by-case approvals since FDA approval in July 2005. Our long-term growth in TRD is dependent on our progress in obtaining favorable national and regional coverage policies in TRD.
 
Our clinical development program has included pilot and pivotal studies in using VNS Therapy (1) as an adjunctive therapy for reducing the frequency of seizures in patients over 12 years of age with partial onset seizures that are refractory to antiepileptic drugs and (2) as an adjunctive treatment of patients 18 years of age and older with chronic or recurrent TRD in a major depressive episode. We have also conducted or provided support for small pilot studies for the treatment of Alzheimer’s Disease, anxiety, chronic migraine headache, bulimia and other indications. These studies have been conducted to determine the safety and effectiveness of VNS Therapy and to determine which new indications might be considered for pivotal studies and, therefore, are an important component of our clinical research activities.
 
Since inception, we have incurred substantial expenses, primarily for research and development activities that include product and process development and clinical trials and related regulatory activities, sales and marketing activities, manufacturing start-up costs and systems infrastructure. We have also made significant investments in recent periods in connection with sales and marketing activities in the U.S. and clinical research costs associated with new indications development, most notably depression. For the period from inception through April 27, 2007, we incurred an accumulated net deficit of approximately $259 million. We anticipate increasing investments in post-approval clinical studies in epilepsy and depression.
 
The primary exchange rate movements that impact our consolidated net sales growth include the U.S. dollar as compared to the Euro. The weakening of the U.S. dollar in fiscal 2006 generally has a favorable impact on our sales for the year. The impact of foreign currency fluctuations on net sales is not indicative of the impact on our operations due to the offsetting foreign currency impact on operating costs and expenses.
 
Related Proceedings
 
Regulatory Proceedings.  In June 2006, the SEC staff advised us that it had commenced an informal inquiry of our stock option grants and related practices, procedures and accounting. In addition, we received a subpoena from the U.S. Attorney requesting documents related to the same matters. For additional information, see “Note 15. Litigation” in the Notes to the Consolidated Financial Statements.
 
Legal Proceedings.  We are named as a nominal defendant in stockholder derivative lawsuits pending in Texas state and federal courts wherein a stockholder purports to pursue claims on our behalf against several of our current and former officers and members of our Board of Directors. For additional information, see “Note 15. Litigation” in the Notes to the Consolidated Financial Statements. In June 2005, a putative class action lawsuit was filed against us and certain of our current and former officers in the United States District Court for the Southern District of Texas. For additional information, see “Note 15. Litigation” in the Notes to the Consolidated Financial Statements.


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Significant Accounting Policies and Critical Accounting Estimates
 
We have adopted various accounting policies to prepare the Consolidated Financial Statements in accordance with accounting principles generally accepted in the U.S. (“GAAP”). Our most significant accounting policies are disclosed in “Note 1. Summary of Significant Accounting Policies and Related Data” in the Notes to the Consolidated Financial Statements.
 
The preparation of the Consolidated Financial Statements, in conformity with GAAP, requires us to make estimates and assumptions that affect the amounts reported in the Consolidated Financial Statements and the related Notes. The accompanying Consolidated Financial Statements have been prepared on a going concern basis. Our estimates and assumptions are updated as appropriate, which in most cases is at least quarterly. We base our estimates on historical experience or various assumptions that are believed to be reasonable under the circumstances, and the results form the basis for making judgments about the reported values of assets, liabilities, revenues and expenses. Actual results may materially differ from these estimates.
 
We consider the following accounting policies as the most significant because, in management’s view, they are most important to the portrayal of our consolidated financial position and results of operations and most demanding in terms of requiring estimates and other exercises of judgment.
 
Accounts Receivable.  We provide an allowance for doubtful accounts based upon specific customer risks and a general provision based upon historical trends. An increase in losses beyond that expected by management or what we have historically experienced would reduce earnings when they become known.
 
Inventories.  We state our inventories at the lower of cost, first-in, first-out (“FIFO”) method, or market. Cost includes the acquisition cost of raw materials and components, direct labor and overhead. Management considers potential obsolescence at each balance sheet date. An acceleration of obsolescence could occur if consumer demand differs from expectations.
 
Property and Equipment.  Property and equipment are carried at cost, less accumulated depreciation. Maintenance, repairs and minor replacements are charged to expense as incurred; significant renewals, improvements and expansions are capitalized. For financial reporting purposes, we compute depreciation using the straight-line method over useful lives ranging from two to nine years. An unanticipated change in the utilization or expected useful life of property and equipment could result in acceleration in the timing of the expenses.
 
Revenue Recognition.  We sell our products through a combination of a direct sales force in the U.S. and certain European countries and through distributors elsewhere. We recognize revenue when title to the goods and risk of loss transfer to customers, providing there are no remaining performance obligations required of us or any matters requiring customer acceptance. We record estimated sales returns and discounts as a reduction of net sales in the same period revenue is recognized. Our revenues are dependent upon sales to new and existing customers pursuant to our current policies. Changes in these policies or sales terms could impact the amount and timing of revenue recognized.
 
Research and Development.  All research and development costs are expensed as incurred. We have entered into contractual obligations for the conduct of clinical studies. Costs are incurred primarily at the time of enrollment and paid under the terms of the contracts. Research and development expenses could vary significantly with changes in the timing of clinical activity.
 
Stock Options.  Prior to April 29, 2006, we adopted the disclosure-only provisions of Statement of Financial Accounting Standards Board (“SFAS”) No. 123, “Accounting for Stock-Based Compensation” and SFAS No. 148, “Accounting for Stock-Based Compensation — Transition and Disclosure,” which disclosures are presented in “Note 1. Summary of Significant Accounting Policies and Related Data” in the Notes to the Consolidated Financial Statements. Because of this election, we accounted for our employee stock-based compensation plans under Accounting Principles Board (“APB”) Opinion No. 25, “Accounting for Stock Issued to Employees” and the related interpretations.
 
We adopted SFAS 123(R) on April 29, 2006 using The Black-Scholes option pricing model and The Modified Prospective Method, which requires the compensation cost to be recognized under SFAS 123(R) for grants issued after the adoption date and the unvested portion of grants issued prior to the adoption date. As a result of the adoption of


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SFAS 123(R), we recognized non-cash share-based compensation expense of approximately $19.4 million during fiscal 2007 including the impact associated with the resignation of certain former officers and employees and we anticipate recognizing approximately $11.4 million in non-cash compensation expense during fiscal 2008. This estimate is affected by assumptions regarding a number of complex and subjective variables.
 
Income Taxes.  We account for income taxes under the asset and liability method. Under this method, deferred income taxes reflect the impact of temporary differences between financial accounting and tax bases of assets and liabilities. Such differences relate primarily to the deductibility of certain accruals and reserves and the effect of tax loss and tax credit carryforwards not yet utilized. Deferred tax assets are evaluated for realization based on a more-likely-than-not criterion in determining if a valuation allowance should be provided.
 
Results of Operations
 
Net Sales
 
U.S. net sales increased by $3.2 million, or 2.9%, in fiscal year 2007 compared to fiscal year 2006 primarily due to higher average selling prices. International net sales increased by $4.3 million, or 28%, in fiscal year 2007 compared to fiscal year 2006, due to a 22% increase in new patient sales and a 9% higher average selling price.
 
U.S. net sales increased by $17.6 million, or 20%, in fiscal year 2006 compared to fiscal year 2005, primarily due to an 18% increase in new patient sales, partially offset by a decrease in replacement sales. International net sales increased by $2.4 million, or 18%, in fiscal year 2006 compared to fiscal 2005 due to increases in new patient sales.
 
Gross Profit
 
Gross profit increased by $5.1 million, or 5% in fiscal year 2007, compared to fiscal year 2006 primarily due to higher average selling prices and increased sales volumes. Gross profit margin decreased by 112 basis points to 86.1% compared to fiscal 2006 due to lower production volumes affecting operational efficiencies, which had an adverse impact of 233 basis points, non-cash stock — based compensation expense of $0.8 million with an impact of 60 basis points offset by higher average selling prices with a favorable impact of 181 basis points.
 
Gross profit increased by $19.9 million, or 23%, in fiscal year 2006 compared to fiscal year 2005, primarily due to higher sales volumes. Gross profit margin increased by 235 basis points to 87.2% due to increased production volumes resulting in improved operational efficiencies impacting gross profit margin by approximately 125 basis points and improvement in average selling prices due to mix which had a favorable impact of 110 basis points.
 
Cost of sales consists primarily of direct labor, allocated manufacturing overhead, third-party contractor costs, royalties and the acquisition cost of raw materials and components. Gross margins can be expected to fluctuate in future periods based upon the mix between U.S. and international sales, direct and distributor sales, the VNS Therapy System selling price, applicable royalty rates and the levels of production volume.
 
Operating Expenses
 
Selling, General and Administrative (“SG&A”) Expenses.  SG&A expenses are comprised of sales, marketing, development, general and administrative activities. SG&A expenses for the fiscal year 2007 decreased by $3.2 million, or 2.3%, as compared to fiscal year 2006. The decrease is primarily due to a decrease of $37.9 million in sales, marketing and related expenses associated with the TRD launch during fiscal year 2006, which was partially offset by higher Finance and Administration expenses of $5.4 million primarily associated with the resignations of our Chief Executive Officer (“CEO”) and our Chief Financial Officer (“CFO”), proxy cost of approximately $1.6 million associated with a director election contest, an increase of $10.9 million in legal and other expenses primarily due to costs associated with the investigation into our stock options granting and accounting practices, and an increase in non-cash charges of $17.7 million applicable to our adoption of SFAS 123(R). SG&A expenses increased by $50.3 million, or 58%, in fiscal year 2006 as compared to fiscal year 2005. SG&A expenses include pre-tax non-cash stock-based compensation expense of $15.4 million, ($2.3) million and $6.1 million for fiscal years ended April 27, 2007, April 28, 2006 and April 29, 2005, respectively. In fiscal 2006, SG&A expense included a credit of $2.3 million for pre-tax non-


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cash stock-based compensation expense due to variable accounting treatment for certain grants and a drop in our common stock price relative to the price at the end of fiscal 2005.
 
Research and Development (“R&D”) Expenses.  R&D expenses are comprised of expenses related to our product and process development, product design efforts, clinical trials programs and regulatory activities. R&D expenses decreased by $1.4 million, or 4.9%, as compared to fiscal year 2006 and increased by $9.4 million, or 47%, in fiscal year 2006 as compared to fiscal year 2005. The decrease in fiscal year 2007 is primarily due to a reduction in engineering and regulatory expenses of $4.9 million, partially offset by an increase of $2.4 million in international clinical expenses and $2.5 million in higher non-cash charges. The increases during fiscal year 2006 as compared to fiscal year 2005 were primarily due to additional product development programs and expanded regulatory activities primarily related to the depression approval and launch. R&D expenses include pre-tax non-cash stock-based compensation expense of $3.3 million, $1.7 million and $0.9 million for fiscal years ended April 27, 2007, April 28, 2006 and April 29, 2005, respectively.
 
Interest Income
 
Interest income of $4.6 million during fiscal year 2007 increased by 45% as compared to interest income of $3.2 million for fiscal year 2006, due to increased interest rates. Interest income for fiscal year 2006 increased by 199% as compared to fiscal year 2005 due to higher average investment balances attributable to the net proceeds of $98.3 million received from the Convertible Notes and higher interest rates.
 
Interest Expense
 
Interest expense of $5.9 million for fiscal year 2007 increased 96% from $3.0 million in fiscal 2006 primarily due to higher loan balances and interest and fees applicable to the Convertible Notes, including $0.4 million of penalty interest. The average interest rate for fiscal 2007 was 7.06% as compared to 6.17% in fiscal 2006.
 
Other Income (Expense), Net
 
Other expense, net of $0.3 million for the 52 weeks ended April 27, 2007, represented a decrease of $0.4 million, or 548% as compared to other income of $0.1 million for the same period during the previous fiscal year. It primarily includes income related to the transaction gains and losses associated with the impact of changes in foreign currency exchange rates offset by derivative expense associated with the extension of certain stock option grants to former employees whose grants would have expired unexercised due to our inability to issue stock under our stock option plans as a consequence of our delinquent SEC reports. Other income, net was $0.1 million for the 52 weeks ended April 28, 2006 and April 29, 2005. It primarily includes income related to the transaction gains and losses associated with the impact of changes in foreign currency exchange rates.
 
Income Taxes
 
At April 27, 2007, we had net operating loss carryforwards for federal income tax purposes of approximately $253.4 million. The following is a reconciliation of statutory federal income tax rates to our effective income tax rate expressed as a percentage of loss before income taxes:
 
                         
    For the 52 Weeks Ended  
    April 27, 2007     April 28, 2006     April 29, 2005  
 
Income Tax Expense
  $ 78,775     $ 99,266     $ 26,113  
                         
U.S. statutory rate
    (34.0 )%     (34.0 )%     (34.0 )%
Change in deferred tax valuation allowance
    30.2       31.6       32.1  
Foreign taxes
    0.1       0.1       0.1  
State and local tax provision
    0.1       0.1       0.0  
Other, net
    3.8       2.4       1.9  
                         
      0.2 %     0.2 %     0.1 %
                         


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Liquidity and Capital Resources
 
Overview
 
We generated a net loss of $51.2 million for the year ended April 27, 2007, as compared to a net loss of $59.1 million for the year ended April 28, 2006 and net loss of $18.6 million for the year ended April 29, 2005. The decrease in net loss during fiscal year 2007 as compared to the loss during fiscal 2006 is primarily due to decreases in SG&A expenses in the amount of $37.9 million as a result of lower sales, marketing and related expenses associated with the TRD launch, and $5.6 million reduction in clinical, engineering and regulatory expenses, partially offset by $18.7 million in higher non-cash charges, $4.3 million associated with the resignation of the CEO and CFO, $1.6 million contested proxy cost and $12.0 million in legal and other expenses related to the SEC investigation. As a result, cash used in operations was $20.7 million for the year ended April 27, 2007, as compared to $70.9 million used in operations for the year ended April 28, 2006 and $4.0 million used in operations for the year ended April 29, 2005. To fund operations, we incurred $5.0 million in additional indebtedness in fiscal 2007 through additional borrowings against our line of credit facility.
 
We believe our current financial and capital resources will be adequate to fund anticipated business activities through fiscal 2008, although there can be no assurance of this as this estimate is based upon a number of assumptions, which may not hold true. Our current assumptions include, consistent with the federal district court’s June 2007 decision, the assumption that no default has occurred under the Indenture for our Convertible Notes, which include principal maturity of greater than 24 months. The Trustee has not appealed the district court’s decision; however, if the Trustee appeals the district court’s decision, and if the court of appeals reverses the district court’s decision, then all unpaid principal and accrued interest on the outstanding Convertible Notes will be due and payable immediately, and we may not be able to maintain our operations as a going concern. Our projections of the future TRD markets for VNS Therapy will be significantly impacted by the timing and outcome of pending reimbursement decisions for depression by major payers. Furthermore, our liquidity could be adversely affected by the factors affecting future operating results that are discussed in “Item 1A. Risk Factors.”
 
Cash Flows
 
Net cash provided by (used in) operating, investing and financing activities were as follows:
 
                         
    52 Weeks Ended  
    April 27, 2007     April 28, 2006     April 29, 2005  
 
Operating activities
  $ (20,688,856 )   $ (70,876,209 )   $ (3,969,672 )
Investing activities
    (1,425,349 )     17,501,141       (11,613,173 )
Financing activities
    14,434,408       106,994,787       10,851,738  
 
Operating Activities
 
Net cash used in operating activities during fiscal year 2007 was approximately $20.7 million as compared to net cash used in operating activities of approximately$70.9 million in fiscal 2006 and approximately $4.0 million in fiscal 2005. Operational cash flow increased by approximately $50.2 million during fiscal year 2007 primarily due to a decrease of approximately $7.9 million in net loss, and favorable changes in non-cash expenses of approximately $19.9 million and in operating assets and liabilities of approximately $22.4 million. Operational cash flow decreased by approximately $66.9 million in fiscal year 2006 as compared to fiscal year 2005 due to a net loss in fiscal 2006 of approximately $59.1 million and an increase of approximately $15.9 million in working capital to support the U.S. TRD launch in fiscal 2006.
 
Investing Activities
 
Net cash used by investing activities during fiscal year 2007 was approximately $1.4 million compared to cash provided by investing activities in fiscal 2006 of approximately $17.5 million and cash used during fiscal year 2005 of approximately $11.6 million. Cash used during fiscal year 2007 was invested in the purchase of property and equipment. Net proceeds during fiscal year 2006 of approximately $22.8 million from the sale of short-term marketable securities were offset by purchases of property and equipment of approximately $4.3 million and


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approximately $1.0 million in restricted cash. Net cash used in investing activities in fiscal 2005 was approximately $11.6 million and included net purchases of short-term marketable securities of approximately $7.9 million and purchases of property and equipment of approximately $3.7 million.
 
Financing Activities
 
Net cash provided by financing activities during fiscal year 2007 was approximately $14.4 million compared to net proceeds of approximately $107.0 million in fiscal 2006 and approximately $10.9 million in fiscal year 2005. The net proceeds during fiscal year 2007 include approximately $5.0 million in borrowings against our line of credit facility and approximately $9.7 million in proceeds from issuance of common stock, partially offset by approximately $0.3 million in payments on financing obligations. On January 13, 2006, we established a $40.0 million revolving line of credit that replaced the $20.0 million revolving line of credit that expired in September 2005. Borrowings against the line of credit were reduced by approximately $0.5 million to $2.5 million in fiscal 2006. On September 27, 2005, we issued Convertible Notes in the amount of $125.0 million. Interest on the Convertible Notes at the rate of 3% per year on the principal amount is payable semi-annually in arrears in cash on March 27 and September 27 of each year, beginning March 27, 2006. Holders may convert their Convertible Notes, which were issued in the form of $1,000 bonds, into 24.0964 shares of our common stock per bond, which equal to a conversion price of approximately $41.50 per share, subject to adjustments, at any time prior to maturity. This offering provided net proceeds of approximately $121 million. We used the proceeds for (1) a simultaneous share buyback of 301,000 shares at $33.20 for a total of $10.0 million and (2) the net cost of $13.0 million of separate convertible bond hedge and common stock warrant transactions, which transactions were designed to limit our exposure to potential dilution from conversion of the Convertible Notes. These transactions resulted in net cash proceeds of $98.3 million. We received approximately $10.5 million in connection with the issuance of shares pursuant to our stock option and employee stock purchase plans in fiscal year 2006.
 
Net cash provided by financing activities in fiscal 2005 was approximately $10.9 million. We received approximately $18.0 million in connection with the issuance of shares pursuant to our stock option and employee stock purchase plans in fiscal year 2005. Borrowings against the line of credit were reduced by approximately $7.0 million to $3.0 million.
 
Debt Instruments and Related Covenants
 
Line of Credit
 
On January 13, 2006, we established a $40.0 million revolving line of credit (“Credit Agreement”) with Merrill Lynch Capital, a division of Merrill Lynch Business Financial Services Inc. (“Administrative Agent”) and the lenders who are party thereto (“Lenders”). The credit facility has a three-year term ending January 13, 2009 and is collateralized by accounts receivable, inventory, subsidiary stock, general intangibles, equipment and other collateral. The collateral does not include our intellectual property and provides the lender only limited rights and remedies with respect to the funds raised in our Convertible Notes offering. Pursuant to the terms of the Credit Agreement, we agreed to maintain a minimum liquidity, which is defined as the sum of the revolving loan limit minus the revolving loan outstanding plus the unrestricted cash and cash equivalent balances of $25.0 million, and to provide periodic certifications of compliance in connection with the facility. The amount available under the facility is limited to 85% of the eligible accounts receivable and a portion of eligible inventory. As of April 27, 2007 our available borrowing capacity was approximately $19.8 million with a loan balance of $7.5 million.
 
On December 29, 2006, we entered into a Consent and Amendment Agreement with the Administrative Agent and Lenders which provided that our receipt of the Notice of Default from the Trustee in connection with the Indenture as a result of our failure to file and deliver our 2006 Form 10-K as purportedly required by the Indenture will not constitute a default under the Credit Agreement so long as there is no determination by a court and we have not otherwise acknowledged that a default has occurred under the Indenture. The Consent and Amendment Agreement with the Administrative Agent and Lenders further provided that for the term of the Consent and Amendment Agreement our borrowing under the Line of Credit is limited to $7.5 million. On February 1, 2007 the terms of the Credit Agreement required that we begin paying interest on the minimum loan balance of $10.0 million.


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If an event of default has occurred under the Indenture as discussed below, we would also be in default of the $40.0 million line of credit.
 
Convertible Notes
 
In September 2005, we issued the Convertible Notes. Interest on the Convertible Notes at the rate of 3% per year on the principal amount is payable semi-annually in arrears in cash on March 27 and September 27 of each year, beginning March 27, 2006. The Convertible Notes are unsecured and subordinated to all of our existing and future senior debt and equal in right of payment with our existing and future senior subordinated debt. Holders may convert their Convertible Notes, which were issued in the form of $1,000 bonds, into 24.0964 shares of our common stock per bond, which equal to a conversion price of approximately $41.50 per share, subject to adjustments, at any time prior to maturity.
 
In July 2006, we received the Notice of Default from the Trustee, pursuant to which the Trustee asserted that we were in default of our obligations under the Indenture as a result of our failure (1) to file with the SEC our 2006 Form 10-K by July 12, 2006 and (2) to deliver a copy of our 2006 Form 10-K to the Trustee by July 27, 2006. In October 2006, we received the Notice of Acceleration from the Trustee informing us that, pursuant to the Indenture, the Trustee declared the Convertible Notes due and payable at their principal amount, together with accrued and unpaid interest, and fees and expenses, and demanding that all such principal, interest, fees and expenses under the Convertible Notes be paid to the Trustee immediately. As such, although the Convertible Notes mature in 2012, we have included them as a current liability on our Consolidated Balance Sheets as of April 27, 2007 and April 28, 2006. On June 13, 2007, a federal district court granted summary judgment to Cyberonics and declared that no default occurred under the Indenture. In its court filings, the Trustee stated that it was seeking approximately $20.0 million in damages plus interest and attorney fees, but it reserved the right to seek immediate payment of full value of the Convertible Notes. See “Note 15. Litigation — Indenture Default Litigation.”
 
The Trustee has not appealed the district court’s decision. If the Trustee appeals the decision of the district court, and if the court of appeals reverses the decision of the district court and determines that a default occurred under the Indenture, then all unpaid principal and accrued interest on the outstanding Convertible Notes could be due and payable immediately unless we negotiate an amendment to the terms of the Indenture. If the principal and accrued interest on the outstanding Convertible Notes must be repaid immediately, we may not have or be able to obtain access to the funds needed to repay the indebtedness, and we may be forced to seek protection under the Bankruptcy Code.
 
If principal and interest on our indebtedness must be repaid immediately, we do not have the cash resources available to repay the debt. If we were not able to secure additional financing, our ability to continue as a going concern would be uncertain.
 
Contractual Obligations
 
We are party to a number of contracts pursuant to which we are paying for clinical studies for current operating obligations payable totaling $2.7 million as of April 27, 2007. Although we have no firm commitments, we expect to make capital expenditures of approximately $2.8 million during fiscal year 2008, primarily to expand organizational capacity and to enhance business infrastructure and facilities.
 
The chart below reflects our obligations under our material contractual obligations as of April 27, 2007.
 
                                         
                            Total
 
          Convertible Notes
    Operating
          Contractual
 
    Line of Credit(1)     Issuance(2)     Leases(3)     Other(4)     Obligations  
 
Contractual Obligations:
                                       
Less Than One Year
  $ 10,829,222     $ 129,375,000     $ 3,275,102     $ 177,475     $ 143,656,799  
1-3 Years
    621,917             5,302,343             5,924,260  
3-5 Years
                23,309             23,309  
Over 5 Years
                             
                                         
Total Contractual Obligations
  $ 11,451,139     $ 129,375,000     $ 8,600,754     $ 177,475     $ 149,604,368  
                                         


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(1) Consists of $10.0 million minimum loan balance requirement and related interest. See “Note 5. Line of Credit” of the Notes to the Consolidated Financial Statements for additional information.
 
(2) Consists of principal and interest obligations related to the Convertible Notes issuance presented as if the Convertible Notes were to become due and payable within twelve months from the issuance of this annual report. Although the Convertible Notes mature in 2012, we have classified them as current due to our receipt of the Notice of Default from the Trustee.
 
(3) Consists of operating lease obligations related to facilities and office equipment.
 
(4) Reflects amounts we expect to expend in connection with sales, marketing and training events and debt payments applicable to acquisition of computer hardware and software.
 
Factors Affecting Future Operating Results and Common Stock Price
 
The factors affecting our future operating results and common stock prices are disclosed in “Item 1A. Risk Factors.”
 
Item 7A.   Quantitative and Qualitative Disclosures About Market Risk
 
We are exposed to limited market risk on interest rates and foreign currency exchange rates.
 
Our exposure to market risk for changes in interest rates relates primarily to our short-term investments in commercial paper, auction rate securities and our line of credit. We do not hedge interest rate exposure or invest in derivative securities. Based upon the average outstanding balances in cash, cash equivalents and our line of credit, a 100-basis point change in interest rates would not have a material impact on our consolidated financial results.
 
Due to the global reach of our business, we are also exposed to market risk from changes in foreign currency exchange rates, particularly with the U.S. dollar over the Euro. Our wholly owned foreign subsidiary is consolidated into our financial results and is subject to risks typical of an international business including, but not limited to, differing economic conditions, changes in political climate, differing tax structures, other regulations and restrictions and foreign exchange rate volatility. Accordingly, our future results could be materially impacted by changes in these or other factors. At this time, we have not deemed it to be cost effective to engage in a program of hedging the effect of foreign currency fluctuations on our operating results using derivative financial instruments. A sensitivity analysis indicates that, if the U.S. dollar uniformly weakened 10% against the Euro, the effect upon the net loss recorded during fiscal year 2007 would be favorable by approximately $0.7 million, or 1.3%. Conversely, if the U.S. dollar uniformly strengthened 10% against the Euro, the impact on our operations would be unfavorable by approximately $0.4 million, or 0.8%.
 
Our Convertible Notes are sensitive to fluctuations in the price of our common stock into which the debt is convertible. Changes in equity prices may result in changes in the fair value of the convertible subordinated debt due to the difference between the current market price of the debt and the market price at the date of issuance of the debt. At April 27, 2007, a 10% decrease in the price of our common stock could have resulted in a decrease of approximately $4.0 million on the net fair value of our Convertible Notes, while a 10% increase in the price of our common stock could have resulted in an increase of approximately $5.0 million on the fair value of our Convertible Notes.
 
Item 8.   Financial Statements and Supplementary Data
 
The information required by this Item is incorporated by reference to the Consolidated Financial Statements beginning on page F-1.
 
Item 9.   Changes in and Disagreements With Accountants on Accounting and Financial Disclosure
 
None.


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Item 9A.   Controls and Procedures
 
Disclosure Controls and Procedures
 
(a)   Evaluation of Disclosure Controls and Procedures
 
We maintain a system of disclosure controls and procedures that are designed to ensure that information required to be disclosed in our reports filed under the Exchange Act is recorded, processed, summarized and reported within the time periods specified in the SEC’s rules and forms. Such information is also accumulated and communicated to management, including our CEO and Principal Financial and Accounting Officer (“CAO”), as appropriate, to allow timely decisions regarding required disclosure. Our management, under the supervision and with the participation of our CEO and CAO, evaluated the effectiveness of the design and operation of our disclosure controls and procedures (as defined in Rules 13a-15(e) and 15d-15(e) under the Exchange Act) as of the end of the most recent fiscal quarter reported on herein. Based on that evaluation, our CEO and CAO concluded that our disclosure controls and procedures were effective as of April 27, 2007.
 
(b)   Management’s Report on Internal Control Over Financial Reporting
 
Our management is responsible for establishing and maintaining adequate internal control over financial reporting as defined in Rules 13a-15(f) and 15d-15(f) under the Exchange Act. Internal control over financial reporting is a process designed by, or under the supervision of, the company’s board of directors, management and other personnel, to provide reasonable assurance regarding the reliability of financial reporting and the preparation of financial statements for external purposes in accordance with generally accepted accounting principles and includes those policies and procedures that (1) pertain to the maintenance of records that, in reasonable detail, accurately and fairly reflect the transactions and dispositions of our assets; (2) provide reasonable assurance that transactions are recorded as necessary to permit preparation of financial statements in accordance with generally accepted accounting principles, and that receipts and expenditures of the company are being made only in accordance with authorizations of management and directors of the company; and (3) provide reasonable assurance regarding prevention or timely detection of unauthorized acquisition, use or disposition of the company’s assets that could have a material effect on the financial statements.
 
Because of its inherent limitations, internal control over financial reporting may not prevent or detect misstatements. Also, projections of any evaluation of effectiveness to future periods are subject to the risk that controls may become inadequate because of changes in conditions, or that the degree of compliance with the policies or procedures may deteriorate.
 
In connection with the preparation of our annual consolidated financial statements, our management, under the supervision and with the participation of our CEO and CAO, assessed the effectiveness of our internal control over financial reporting based on criteria established in Internal Control — Integrated Framework issued by the Committee of Sponsoring Organizations of the Treadway Commission (“COSO”). Our management has concluded that our internal control over financial reporting was effective as of April 27, 2007.
 
KPMG LLP, our independent registered public accounting firm, has issued an audit report on management’s assessment of internal control over financial reporting as of April 27, 2007.
 
(c)   Changes in Internal Control Over Financial Reporting
 
The following were changes in our internal control over financial reporting that occurred during our most recent fiscal quarter that have materially affected, or are reasonably likely to materially affect, our internal control over financial reporting.
 
  •  We conducted training sessions for the Compensation Committee and other individuals involved in or responsible for the granting and recording of equity incentive awards;
 
  •  Management implemented a control which involved a review of measurement dates, fair value assumptions, and calculations for all grants issued in fiscal year 2007.


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In addition, the Board of Directors approved and implemented a new equity incentive policy effective November 18, 2006, which limited the issuance of grants to certain pre-defined dates and required that all grants be approved by the Compensation Committee or the Board;
 
Based on the changes in internal control, a material weakness did not exist as of April 27, 2007.
 
Other Changes in Internal Control Over Financial Reporting
 
There have been no other changes in our internal control over financial reporting during the quarter ended in April 27, 2007 in connection with the aforementioned evaluation that have materially affected, or are reasonably likely to materially affect, our internal control over financial reporting.
 
Audit Committee Oversight
 
The adequacy of our internal control over financial reporting, the accounting principles employed in our financial reporting and the scope of independent audits are reviewed by the Audit Committee, consisting solely of outside directors. The independent auditors meet with, and have confidential access to, the Audit Committee to discuss the results of their audit work.


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REPORT OF INDEPENDENT REGISTERED PUBLIC ACCOUNTING FIRM
 
The Board of Directors and Stockholders
Cyberonics, Inc.:
 
We have audited management’s assessment, included in the accompanying Management’s Report on Internal Control Over Financial Reporting (Item 9A(b)) that Cyberonics, Inc. maintained effective internal control over financial reporting as of April 27, 2007, based on criteria established in Internal Control — Integrated Framework issued by the Committee of Sponsoring Organizations of the Treadway Commission (COSO). Cyberonics, Inc.’s management is responsible for maintaining effective internal control over financial reporting and for its assessment of the effectiveness of internal control over financial reporting. Our responsibility is to express an opinion on management’s assessment and an opinion on the effectiveness of the Company’s internal control over financial reporting based on our audit.
 
We conducted our audit in accordance with the standards of the Public Company Accounting Oversight Board (United States). Those standards require that we plan and perform the audit to obtain reasonable assurance about whether effective internal control over financial reporting was maintained in all material respects. Our audit included obtaining an understanding of internal control over financial reporting, evaluating management’s assessment, testing and evaluating the design and operating effectiveness of internal control, and performing such other procedures as we considered necessary in the circumstances. We believe that our audit provides a reasonable basis for our opinion.
 
A company’s internal control over financial reporting is a process designed to provide reasonable assurance regarding the reliability of financial reporting and the preparation of financial statements for external purposes in accordance with generally accepted accounting principles. A company’s internal control over financial reporting includes those policies and procedures that (1) pertain to the maintenance of records that, in reasonable detail, accurately and fairly reflect the transactions and dispositions of the assets of the company; (2) provide reasonable assurance that transactions are recorded as necessary to permit preparation of financial statements in accordance with generally accepted accounting principles, and that receipts and expenditures of the company are being made only in accordance with authorizations of management and directors of the company; and (3) provide reasonable assurance regarding prevention or timely detection of unauthorized acquisition, use, or disposition of the company’s assets that could have a material effect on the financial statements.
 
Because of its inherent limitations, internal control over financial reporting may not prevent or detect misstatements. Also, projections of any evaluation of effectiveness to future periods are subject to the risk that controls may become inadequate because of changes in conditions, or that the degree of compliance with the policies or procedures may deteriorate.
 
In our opinion, management’s assessment that Cyberonics, Inc. maintained effective internal control over financial reporting as of April 27, 2007, is fairly stated, in all material respects, based on criteria established in Internal Control — Integrated Framework issued by the Committee of Sponsoring Organizations of the Treadway Commission (COSO). Also, in our opinion, Cyberonics, Inc., maintained, in all material respects, effective internal control over financial reporting as of April 27, 2007, based on criteria established in Internal Control — Integrated Framework issued by the Committee of Sponsoring Organizations of the Treadway Commission (COSO).
 
We also have audited, in accordance with the standards of the Public Company Accounting Oversight Board (United States), the consolidated balance sheets of Cyberonics, Inc. and subsidiary as of April 27, 2007 and April 28, 2006, and the related consolidated statements of operations, stockholders’ equity (deficit) and comprehensive loss, and cash flows for the 52 weeks ended April 27, 2007, April 28, 2006, and April 29, 2005, and our report dated July 6, 2007 expressed an unqualified opinion on those consolidated financial statements.
 
/s/  KPMG LLP
 
Houston, Texas
July 6, 2007


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Item 9B.   Other Information
 
None.
 
PART III
 
Item 10.   Directors, Executive Officers and Corporate Governance
 
Pursuant to general instruction G to Form 10-K, we incorporate by reference into this item the information to be disclosed in our definitive proxy statement for our 2007 Annual Meeting of Stockholders.
 
Item 11.   Executive Compensation
 
Pursuant to general instruction G to Form 10-K, we incorporate by reference into this item the information to be disclosed in our definitive proxy statement for our 2007 Annual Meeting of Stockholders.
 
Item 12.   Security Ownership of Certain Beneficial Owners and Management and Related Stockholder Matters
 
Pursuant to general instruction G to Form 10-K, we incorporate by reference into this item the information to be disclosed in our definitive proxy statement for our 2007 Annual Meeting of Stockholders.
 
Item 13.   Certain Relationships and Related Transactions, and Director Independence
 
Pursuant to general instruction G to Form 10-K, we incorporate by reference into this item the information to be disclosed in our definitive proxy statement for our 2007 Annual Meeting of Stockholders.
 
Item 14.   Principal Accountant Fees and Services
 
Pursuant to general instruction G to Form 10-K, we incorporate by reference into this item the information to be disclosed in our definitive proxy statement for our 2007 Annual Meeting of Stockholders.


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PART IV
 
Item 15.   Exhibits, Financial Statement Schedules
 
(1) Financial Statements.
 
The Consolidated Financial Statements of Cyberonics, Inc. and its subsidiary, and the Report of Independent Registered Public Accounting Firm are included in this Form 10-K beginning on page F-1:
 
         
Description
  Page No.
 
Report of Independent Registered Public Accounting Firm
  F-2
Consolidated Balance Sheets
  F-3
Consolidated Statements of Operations
  F-4
Consolidated Statements of Stockholders’ Equity (Deficit) and Comprehensive Loss
  F-5
Consolidated Statements of Cash Flows
  F-6
Notes to Consolidated Financial Statements
  F-7
 
(2) Financial Statement Schedules
 
All schedules required by Regulation S-X have been omitted as not applicable or not required, or the information required has been included in the Notes to the financial statements.
 
(3) Index to Exhibits
 
The exhibits marked with the asterisk symbol (*) are filed with this Form 10-K. The exhibits marked with the cross symbol (†) are management contracts or compensatory plans or arrangements filed pursuant to Item 601(b)(10)(iii) of Regulation S-K.
 
                     
            SEC File or
   
Exhibit
          Registration
  Exhibit
Number
  Document Description   Report or Registration Statement   Number   Reference
 
  3 .1   Amended and Restated Certificate of Incorporation of Cyberonics, Inc.    Cyberonics, Inc.’s Registration Statement on Form S-3 filed on February 21, 2001   333-56022   3.1
  3 .2   Bylaws of Cyberonics, Inc.    Cyberonics, Inc.’s Current Report on Form 8-K filed on September 12, 2000   000-19806   3.1
  3 .3   Amendment No. 1 to the Bylaws of Cyberonics, Inc.    Cyberonics, Inc.’s Current Report on Form 8-K filed on March 30, 2001   000-19806   3.1
  4 .1   Second Amended and Restated Preferred Shares Rights Agreement dated August 21, 2000 between Cyberonics, Inc. and BankBoston, N.A. (formerly known as The First National Bank of Boston), including the Form of First Amended Certificate of Designation of Rights, Preferences and Privileges of Series A Participating Preferred Stock of Cyberonics, Inc., Form of Rights Certificate and Stockholder Rights Plan attached thereto as Exhibits A, B and C, respectively   Cyberonics, Inc.’s Current Report on Form 8-K filed on September 12, 2000   000-19806   4.1
  4 .2   Amendment No. 1 to Second Amended and Restated Preferred Share Rights Agreement dated April 26, 2001   Cyberonics, Inc.’s Annual Report and Transition Report on Form 10-K for the fiscal period ended April 27, 2001 and the transition period from July 1, 2000 to April 27, 2001   000-19806   4.2
  4 .3   Amendment No. 2 to Second Amended and Restated Preferred Share Rights Agreement dated October 31, 2001   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 30, 2004   000-19806   4.3
  4 .4   Amendment No. 3 to Second Amended and Restated Preferred Share Rights Agreement dated December 9, 2003   Cyberonics, Inc.’s Current Report on Form 8-K filed on December 12, 2003   000-19806   99.2


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Table of Contents

                     
            SEC File or
   
Exhibit
          Registration
  Exhibit
Number
  Document Description   Report or Registration Statement   Number   Reference
 
  4 .5   Amendment No. 4 to Second Amended and Restated Preferred Share Rights Agreement dated January 9, 2004   Cyberonics, Inc.’s Current Report on Form 8-K filed on January 13, 2004   000-19806   99.2
  4 .6   Indenture dated September 27, 2005 between Cyberonics, Inc. and Wells Fargo Bank, National Association, as Trustee   Cyberonics, Inc.’s Current Report on Form 8-K filed on October 3, 2005   000-19806   10.1
  4 .7   Registration Rights Agreement dated September 27, 2005 between Cyberonics, Inc. and Merrill Lynch, Pierce, Fenner & Smith Incorporated, as the Initial Purchaser   Cyberonics, Inc.’s Current Report on Form 8-K filed on October 3, 2005   000-19806   10.2
  4 .8   Form of Confirmation of OTC Convertible Note Hedge executed September 21, 2005 to be effective September 27, 2005   Cyberonics, Inc.’s Current Report on Form 8-K filed on October 3, 2005   000-19806   10.3
  4 .9   Form of Confirmation of OTC Warrant Transaction executed September 21, 2005 to be effective September 27, 2005   Cyberonics, Inc.’s Current Report on Form 8-K filed on October 3, 2005   000-19806   10.4
  4 .10   Amendment No. 5 to Second Amended and Restated Preferred Share Rights Agreement   Cyberonics, Inc.’s Current Report on Form 8-K filed on February 1, 2007   000-19806   4.1
  10 .1   License Agreement dated March 15, 1988 between Cyberonics, Inc. and Dr. Jacob Zabara   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.1
  10 .2   License Agreement dated August 22, 2000 between Cyberonics, Inc. and Dr. Mitchell S. Roslin   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.2
  10 .3   Lease Agreement dated December 5, 2002 between Cyberonics, Inc., as Lessee, and Space Center Operating Associates, LP, as Lessor, commencing on December 8, 2002 for Space “A” and January 1, 2004 for Space “B,” as amended March 3, 2003 (First Amendment), October 2, 2003 (Second Amendment), March 11, 2004 (Third Amendment), March 17, 2004 (Subordination, Non-Disturbance and Attornment), March 19, 2004 (Transfer of Ownership to Triple Net Properties, LLC), March 23, 2005 (Fourth Amendment), May 5, 2005 (Fifth Amendment) and July 13, 2005 (Sixth Amendment)   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.3
  10 .4   Letter Agreement dated March 28, 1997 between The Clark Estates, Inc. and Cyberonics, Inc.    Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended June 30, 1997   000-19806   10.11
  10 .5   Purchase Agreement dated September 21, 2005 between Cyberonics, Inc. and Merrill Lynch, Pierce, Fenner & Smith Incorporated, as the Initial Purchaser   Cyberonics, Inc.’s Current Report on Form 8-K filed on September 27, 2005   000-19806   10.1
  10 .6   Credit Agreement between Cyberonics, Inc. and Merrill Lynch Capital, a division of Merrill Lynch Business Financial Services Inc., as Administrative Agent and as Lender and as Sole Bookrunner and Sole Lead Arranger, and the additional Lenders thereto dated January 13, 2006   Cyberonics, Inc.’s Current Report on Form 8-K filed on January 19, 2006   000-19806   10.1

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            SEC File or
   
Exhibit
          Registration
  Exhibit
Number
  Document Description   Report or Registration Statement   Number   Reference
 
  10 .7   Consent and Amendment Agreement effective October 31, 2006 to the Credit Agreement between Cyberonics, Inc. and Merrill Lynch Capital, a division of Merrill Lynch Business Financial Services Inc., individually as Lender, Administrative Agent, Sole Bookrunner and Sole Lead Arranger, and the additional Lenders thereto   Cyberonics, Inc.’s Current Report on Form 8-K filed on November 6, 2006   000-19806   10.1
  10 .8   Consent and Amendment Agreement effective July 27, 2006 to the Credit Agreement between Cyberonics, Inc. and Merrill Lynch Capital, a division of Merrill Lynch Business Financial Services Inc., individually as Lender, Administrative Agent, Sole Bookrunner and Sole Lead Arranger, and the additional Lenders thereto   Cyberonics, Inc.’s Current Report on Form 8-K filed on July 27, 2006   000-19806   10.1
  10 .9   Consulting Agreement between Cyberonics, Inc. and BK Consulting, an assumed name used by Reese S. Terry, Jr., a founder and member of the Board of Directors of Cyberonics, Inc., dated August 25, 2005   Cyberonics, Inc.’s Current Report on Form 8-K filed on August 30, 2005   000-19806   99.1
  10 .10   Amendment to Consulting Agreement between Cyberonics, Inc. and BK Consulting dated August 23, 2006   Cyberonics, Inc.’s Current Report on Form 8-K filed on August 25, 2006   000-19806   10.1
  10 .11   Termination of Consulting Agreement between Cyberonics, Inc. and BK Consulting effective November 19, 2006   Cyberonics, Inc.’s Current Report on Form 8-K filed on December 13, 2006   000-19806   10.1
  10 .12   Consulting Agreement dated November 19, 2006 between Cyberonics, Inc. and Pamela B. Westbrook   Cyberonics, Inc.’s Current Report on Form 8-K filed on November 20, 2006   000-19806   10.3
  10 .13†   Cyberonics, Inc. Amended and Restated 1996 Stock Option Plan   Cyberonics, Inc.’s Registration Statement on Form S-8 filed on April 29, 1999   333-77361   4.1
  10 .14†   First Amendment to the Cyberonics, Inc. Amended and Restated 1996 Stock Option Plan dated October 2, 2000   Cyberonics, Inc.’s Quarterly Report on Form 10-Q for the quarter ended September 30, 2000   000-19806   10.2
  10 .15†   Second Amendment to the Cyberonics, Inc. Amended and Restated 1996 Stock Option Plan dated March 21, 2001   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 30, 2004   000-19806   10.12
  10 .16†   Third Amendment to the Cyberonics, Inc. Amended and Restated 1996 Stock Option Plan dated July 27, 2001   Cyberonics, Inc.’s Registration Statement on Form S-8 filed on January 22, 2002   333-81158   4.4
  10 .17†   Fourth Amendment to the Cyberonics, Inc. Amended and Restated 1996 Stock Option Plan dated January 2002   Cyberonics, Inc.’s Registration Statement on Form S-8 filed on January 22, 2002   333-81158   4.5
  10 .18†   Fifth Amendment to the Cyberonics, Inc. Amended and Restated 1996 Stock Option Plan dated July 19, 2002   Cyberonics, Inc.’s Registration Statement on Form S-8 filed on July 25, 2002   333-97095   4.1
  10 .19†   Cyberonics, Inc. Amended and Restated 1997 Stock Plan   Cyberonics, Inc.’s Registration Statement on Form S-8 filed on March 8, 2001   333-56694   4.5
  10 .20†   First Amendment to the Cyberonics, Inc. Amended and Restated 1997 Stock Plan dated March 21, 2001   Cyberonics, Inc.’s Quarterly Report on Form 10-Q for the quarter ended July 26, 2002   000-19806   10.1
  10 .21†   Second Amendment to the Cyberonics, Inc. Amended and Restated 1997 Stock Plan dated November 21, 2002   Cyberonics, Inc.’s Proxy Statement for the Annual Meeting of Stockholders filed on October 15, 2002   000-19806   Annex B

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Table of Contents

                     
            SEC File or
   
Exhibit
          Registration
  Exhibit
Number
  Document Description   Report or Registration Statement   Number   Reference
 
  10 .22†   Cyberonics, Inc. 1998 Stock Option Plan   Cyberonics, Inc.’s Registration Statement on Form S-8 filed on November 3, 1998   333-66691   4.1
  10 .23†   First Amendment to the Cyberonics, Inc. 1998 Stock Option Plan dated March 21, 2001   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 30, 2004   000-19806   10.23
  10 .24†   Cyberonics, Inc. New Employee Equity Inducement Plan   Cyberonics, Inc.’s Registration Statement on Form S-8 filed on August 27, 2003   333-108281   4.3
  10 .25†   Cyberonics, Inc. 2005 Stock Plan   Cyberonics, Inc.’s Proxy Statement for the Special Meeting of Stockholders filed on April 14, 2005   000-19806   Annex A
  10 .26†   Indemnification Agreement effective August 1, 2003 between Cyberonics, Inc. and Robert P. Cummins   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.32
  10 .27†   Employment Agreement effective August 5, 2005 between Cyberonics, Inc. and Robert P. Cummins   Cyberonics, Inc.’s Current Report on Form 8-K filed on August 9, 2005   000-19806   99.1
  10 .28†   Letter Agreement Regarding Advancement of Attorney’s Fees effective September 28, 2006 between Cyberonics, Inc. and Robert P. Cummins   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.34
  10 .29†   Resignation Agreement effective November 17, 2006 between Cyberonics, Inc. and Robert P. Cummins   Cyberonics, Inc.’s Current Report on Form 8-K filed on November 20, 2006   000-19806   10.1
  10 .30†   Severance Agreement effective June 1, 2003 between Cyberonics, Inc. and William Steven Jennings   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 25, 2003   000-19806   10.21
  10 .31†   Officer Stock Option Plan Agreement dated June 2, 2003 between Cyberonics, Inc. and William Steven Jennings   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.37
  10 .32†   Employment Agreement effective June 15, 2006 between Cyberonics, Inc. and William Steven Jennings   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.38
  10 .33†   Indemnification Agreement effective June 28, 1999 between Cyberonics, Inc. and Alan J. Olsen   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.44
  10 .34†   Severance Agreement effective July 14, 2003 between Cyberonics, Inc. and George E. Parker   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 30, 2004   000-19806   10.40
  10 .35†   Officer Stock Option Plan Agreement dated July 14, 2003 between Cyberonics, Inc. and George E. Parker   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.46
  10 .36†   Employment Agreement effective July 14, 2003 between Cyberonics, Inc. and George E. Parker   Cyberonics, Inc.’s Quarterly Report on Form 10-Q for the quarter ended October 24, 2003   000-19806   10.1
  10 .37†   First Amendment to Employment Agreement effective June 15, 2006 between Cyberonics, Inc. and George E. Parker   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.48
  10 .38†   Stand Alone Stock Option Agreement dated August 23, 2001 between Cyberonics, Inc. and Richard L. Rudolph, M.D.    Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.49
  10 .39†   Severance Agreement effective January 1, 2002 between Cyberonics, Inc. and Richard L. Rudolph, M.D.    Cyberonics, Inc.’s Quarterly Report on Form 10-Q for the quarter ended January 25, 2002   000-19806   10.3

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Table of Contents

                     
            SEC File or
   
Exhibit
          Registration
  Exhibit
Number
  Document Description   Report or Registration Statement   Number   Reference
 
  10 .40†   Employee Restricted Stock Agreement dated July 22, 2005 between Cyberonics, Inc. and Richard L. Rudolph, M.D.    Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.51
  10 .41†   Employment Agreement effective June 15, 2006 between Cyberonics, Inc. and Richard L. Rudolph, M.D.    Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.52
  10 .42†   Stock Option Agreement Amendment and Bonus Agreement dated December 28, 2006 between Cyberonics, Inc. and Richard L. Rudolph, M.D.    Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.53
  10 .43†   Employment Agreement effective June 15, 2006 between Cyberonics, Inc. and Pamela B. Westbrook   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.58
  10 .44†   Letter Agreement Regarding Advancement of Attorney’s Fees effective October 12, 2006 between Cyberonics, Inc. and Pamela B. Westbrook   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.59
  10 .45†   Resignation Agreement effective November 19, 2006 between Cyberonics, Inc. and Pamela B. Westbrook   Cyberonics, Inc.’s Current Report on Form 8-K filed on November 20, 2006   000-19806   10.45
  10 .46†   Indemnification Agreement effective August 1, 2003 between Cyberonics, Inc. and David S. Wise   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.61
  10 .47†   Severance Agreement effective September 17, 2003 between Cyberonics, Inc. and David S. Wise   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 30, 2004   000-19806   10.42
  10 .48†   Employment Agreement effective September 17, 2003 between Cyberonics, Inc. and David S. Wise   Cyberonics, Inc.’s Quarterly Report on Form 10-Q for the quarter ended October 24, 2003   000-19806   10.2
  10 .49†   First Amendment to Employment Agreement effective June 15, 2006 between Cyberonics, Inc. and David S. Wise   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.64
  10 .50†   New Employee Equity Inducement Plan Agreement dated September 17, 2003 between Cyberonics, Inc. and David S. Wise   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.65
  10 .51†   Form of Indemnification Agreement for directors of Cyberonics, Inc.    Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.66
  10 .52†   Form of Director Restricted Stock Agreement effective June 1, 2005   Cyberonics, Inc.’s Quarterly Form 10-Q for the quarter ended July 29, 2005   000-19806   10.52
  10 .53†   Form of Amendment to Director Stock Option Agreement dated December 2006 between Cyberonics, Inc. and the directors listed on the schedule attached thereto   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.68
  10 .54†   Form of Stock Option Agreement under the Cyberonics, Inc. Amended and Restated 1996 Stock Option Plan between Cyberonics, Inc. and the executive officers listed on the schedule attached thereto   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.69
  10 .55†   Form of Stock Option Agreement under the Cyberonics, Inc. 2005 Stock Plan between Cyberonics, Inc. and the executive officers listed on the schedule attached thereto   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.70

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Table of Contents

                     
            SEC File or
   
Exhibit
          Registration
  Exhibit
Number
  Document Description   Report or Registration Statement   Number   Reference
 
  10 .56†   Form of Employee Restricted Stock Agreement under the Cyberonics, Inc. 2005 Stock Plan (one-year vesting)   Cyberonics, Inc.’s Quarterly Form 10-Q for the quarter ended July 29, 2005   000-19806   10.2
  10 .57†   Form of Employee Restricted Stock Agreement under the Cyberonics, Inc. 2005 Stock Plan (five-year vesting) and the executive officers listed on the schedule attached thereto   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.72
  10 .58†   Consent and Amendment Agreement, dated December 29, 2006, by and among Cyberonics, Inc., Merrill Lynch Capital, and the Lenders party to the Credit Agreement (as defined therein)   Cyberonics, Inc.’s Current Report on Form 8-K filed on January 5, 2007   000-19806   10.1
  10 .59†   Separation Agreement between Steve Jennings and Cyberonics, Inc., dated January 31, 2007   Cyberonics, Inc.’s Current Report on Form 8-K filed on February 6, 2007   000-19806   10.1
  10 .60†   Amended and Restated Cyberonics, Inc. New Employee Inducement Plan   Cyberonics, Inc.’s Current Report on Form 8-K filed on April 30, 2007   000-19806   10.1
  10 .61†   Employment Agreement by and between Cyberonics, Inc. and Daniel Jeffrey Moore   Cyberonics, Inc.’s Current Report on Form 8-K filed on May 1, 2007   000-19806   10.1
  10 .62†   Release Agreement by and between Cyberonics, Inc. and John Riccardi   Cyberonics, Inc.’s Current Report on Form 8-K filed on May 10, 2007   000-19806   10.1
  10 .63†*   Retention Agreement by and between Cyberonics, Inc. and John Riccardi dated November 14, 2005            
  10 .64†*   Description Of Non-Equity Incentive Compensation Plans            
  10 .65†*   Consulting Agreement between Cyberonics, Inc. and BK Consulting, an assumed name used by Reese S. Terry, Jr., a founder and member of the Board of Directors of Cyberonics, Inc., dated May 16, 2007            
  10 .66†*   Executive Restricted Stock Agreement between Cyberonics, Inc. and Daniel J. Moore dated June 18, 2007            
  10 .67†*   Description of Non-Equity Incentive Compensation under the Employment Agreement of Robert P. Cummins            
  21 .1   List of Subsidiaries of Cyberonics, Inc.   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   21.1
  23 .1*   Consent of Independent Registered Public Accounting Firm, KPMG LLP            
  24 .1*   Powers of Attorney (included on the Signature Page to this Annual Report on Form 10-K)            
  31 .1*   Certification of the Chief Executive Officer of Cyberonics, Inc. pursuant to Section 302 of the Sarbanes-Oxley Act of 2002            
  31 .2*   Certification of the Chief Financial Officer of Cyberonics, Inc. pursuant to Section 302 of the Sarbanes-Oxley Act of 2002            
  32 .1*   Certification of the Chief Executive Officer and Chief Financial Officer of Cyberonics, Inc. pursuant to Section 906 of the Sarbanes-Oxley Act of 2002            

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SIGNATURES
 
Pursuant to the requirements of Section 13 or 15(d) of the Securities Exchange Act of 1934, the registrant has duly caused this report to be signed on its behalf by the undersigned, thereunto duly authorized.
 
Cyberonics, Inc.
 
  By: 
/s/  George E. Parker III
Interim Principal Accounting Officer
(Principal Financial Officer and
Principal Accounting Officer)
 
Date: July 6, 2007
 
POWER OF ATTORNEY
 
KNOW ALL PERSONS BY THESE PRESENTS, that each person whose signature appears below constitutes and appoints Daniel J. Moore and George E. Parker III, jointly and severally, his attorneys-in-fact, each with the power of substitution, for him in any and all capacities, to sign any amendments to this Annual Report on Form 10-K, and to file the same, with exhibits thereto and other documents in connection therewith, with the Securities and Exchange Commission, hereby ratifying and conforming all that each of said attorneys-in-fact, or his substitute or substitutes, any do or cause to be done by virtue hereof.
 
Pursuant to the requirements of the Securities Exchange Act of 1934, this report has been signed below by the following persons on behalf of the registrant and in the capacities and on the dates indicated:
 
             
Signature
 
Title
 
Date
 
/s/  HUGH M. MORRISON

Hugh M. Morrison
  Chairman of the Board of Directors   July 6, 2007
         
/s/  DANIEL J. MOORE

Daniel J. Moore
  Director, President and
Chief Executive Officer
(Principal Executive Officer)
  July 6, 2007
         
/s/  GEORGE E. PARKER III

George E. Parker III
  Interim Principal Accounting Officer
(Principal Financial Officer and Principal Accounting Officer)
  July 6, 2007
         
/s/  GUY C. JACKSON

Guy C. Jackson
  Director   July 6, 2007
         
/s/  ALFRED J. NOVAK

Alfred J. Novak
  Director   July 6, 2007
         
/s/  ALAN J. OLSEN

Alan J. Olsen
  Director   July 6, 2007
         
/s/  ARTHUR L. ROSENTHAL PH D.

Arthur L. Rosenthal, Ph D.
  Director   July 6, 2007


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Signature
 
Title
 
Date
 
/s/  JEFFREY E. SCHWARZ

Jeffrey E. Schwarz
  Director   July 6, 2007
         
/s/  MICHAEL J. STRAUSS, M.D., M.P.H.

Michael J. Strauss, M.D., M.P.H.
  Director   July 6, 2007
         
/s/  REESE S. TERRY, JR.

Reese S. Terry, Jr.
  Director   July 6, 2007


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CONSOLIDATED FINANCIAL STATEMENTS
April 27, 2007, April 28, 2006 and April 29, 2005
TOGETHER WITH INDEPENDENT REGISTERED PUBLIC ACCOUNTING FIRM’S REPORT
 


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Table of Contents

REPORT OF INDEPENDENT REGISTERED PUBLIC ACCOUNTING FIRM
 
The Board of Directors and Stockholders
Cyberonics, Inc.:
 
We have audited the accompanying consolidated balance sheets of Cyberonics, Inc. and subsidiary as of April 27, 2007 and April 28, 2006, and the related consolidated statements of operations, stockholders’ equity (deficit) and comprehensive loss, and cash flows for the 52 weeks ended April 27, 2007, April 28, 2006, and April 29, 2005. These consolidated financial statements are the responsibility of the Company’s management. Our responsibility is to express an opinion on these consolidated financial statements based on our audits.
 
We conducted our audits in accordance with the standards of the Public Company Accounting Oversight Board (United States). Those standards require that we plan and perform the audit to obtain reasonable assurance about whether the financial statements are free of material misstatement. An audit includes examining, on a test basis, evidence supporting the amounts and disclosures in the financial statements. An audit also includes assessing the accounting principles used and significant estimates made by management, as well as evaluating the overall financial statement presentation. We believe that our audits provide a reasonable basis for our opinion.
 
In our opinion, the consolidated financial statements referred to above present fairly, in all material respects, the financial position of Cyberonics, Inc. and subsidiary as of April 27, 2007 and April 28, 2006, and the results of their operations and their cash flows for the 52 weeks ended April 27, 2007, April 28, 2006, and April 29, 2005, in conformity with U.S. generally accepted accounting principles.
 
As discussed in Note 1 to the consolidated financial statements, effective April 29, 2006, the Company changed its method of accounting for share-based payments.
 
We also have audited, in accordance with the standards of the Public Company Accounting Oversight Board (United States), the effectiveness of Cyberonics, Inc.’s internal control over financial reporting as of April 27, 2007, based on criteria established in Internal Control — Integrated Framework issued by the Committee of Sponsoring Organizations of the Treadway Commission (COSO), and our report dated July 6, 2007 expressed an unqualified opinion on management’s assessment of, and the effective operation of, internal control over financial reporting.
 
The accompanying consolidated financial statements have been prepared assuming that the Company will continue as a going concern. As discussed in Note 2 to the consolidated financial statements, the Company has suffered recurring losses from operations, received a Notice of Default and demand letter and Notice of Acceleration for the $125 million senior subordinated convertible notes and incurred a potential default of the $40 million Line of Credit. These matters raise substantial doubt about its ability to continue as a going concern. Management’s plans in regard to these matters are also described in Note 2. The consolidated financial statements do not include any adjustments that might result from the outcome of this uncertainty.
 
/s/  KPMG LLP
 
Houston, Texas
July 6, 2007


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CYBERONICS, INC. AND SUBSIDIARY
 
CONSOLIDATED BALANCE SHEETS
 
                 
    April 27, 2007     April 28, 2006  
 
ASSETS
Current Assets:
               
Cash and cash equivalents
  $ 84,804,876     $ 92,355,071  
Restricted cash
    1,000,000       1,000,000  
Accounts receivable, net
    18,914,206       21,341,942  
Inventories
    17,580,830       17,304,794  
Other current assets
    3,127,345       5,274,133  
                 
Total Current Assets
    125,427,257       137,275,940  
Property and equipment, net
    8,028,037       10,322,289  
Other assets
    4,189,589       4,702,055  
                 
Total Assets
  $ 137,644,883     $ 152,300,284  
                 
 
LIABILITIES AND STOCKHOLDERS’ EQUITY (DEFICIT)
Current Liabilities:
               
Line of credit
  $ 7,500,000     $ 2,500,000  
Accounts payable
    5,951,931       5,190,385  
Accrued liabilities
    14,844,266       12,655,970  
Convertible Notes
    125,000,000       125,000,000  
Other
    115,731       1,175,606  
                 
Total Current Liabilities
    153,411,928       146,521,961  
Long Term Liabilities:
               
Other
    295,184       1,148,457  
                 
Total Long Term Liabilities
    295,184       1,148,457  
                 
Total Liabilities
    153,707,112       147,670,418  
Stockholders’ Equity (Deficit):
               
Preferred Stock, $.01 par value per share; 2,500,000 shares authorized; no shares issued and outstanding
           
Common Stock, $.01 par value per share; 50,000,000 shares authorized; 26,701,054 issued and 26,400,054 outstanding at April 27, 2007; and 25,781,349 shares issued and 25,480,349 shares outstanding at April 28, 2006
    267,011       257,813  
Additional paid-in capital
    265,608,804       244,648,193  
Common stock warrants
    25,200,000       25,200,000  
Hedges on Convertible Notes
    (38,200,000 )     (38,200,000 )
Deferred compensation
          (9,167,093 )
Treasury stock, 301,000 common shares, at cost
    (9,993,200 )     (9,993,200 )
Accumulated other comprehensive loss
    (298,588 )     (649,698 )
Accumulated deficit
    (258,646,256 )     (207,466,149 )
                 
Total Stockholders’ Equity (Deficit)
    (16,062,229 )     4,629,866  
                 
Total Liabilities and Stockholders’ Equity (Deficit)
  $ 137,644,883     $ 152,300,284  
                 
 
See accompanying Notes to Consolidated Financial Statements


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CYBERONICS, INC. AND SUBSIDIARY
 
CONSOLIDATED STATEMENTS OF OPERATIONS
 
                         
    52 Weeks Ended  
    April 27, 2007     April 28, 2006     April 29, 2005  
 
Net sales
  $ 130,968,437     $ 123,441,575     $ 103,442,570  
Cost of sales
    18,258,374       15,822,045       15,674,040  
                         
Gross Profit
    112,710,063       107,619,530       87,768,530  
                         
Operating Expenses:
                       
Selling, general and administrative
    134,144,315       137,310,196       86,972,068  
Research and development
    28,092,243       29,541,707       20,092,810  
                         
Total Operating Expenses
    162,236,558       166,851,903       107,064,878  
                         
Loss From Operations
    (49,526,495 )     (59,232,373 )     (19,296,348 )
Interest income
    4,649,394       3,211,956       1,072,488  
Interest expense
    (5,913,119 )     (3,018,969 )     (444,270 )
Other income (expense), net
    (311,112 )     69,460       84,736  
                         
Loss before income taxes
    (51,101,332 )     (58,969,926 )     (18,583,394 )
Income tax expense
    78,775       99,266       26,113  
                         
Net Loss
  $ (51,180,107 )   $ (59,069,192 )   $ (18,609,507 )
                         
Basic loss per share
  $ (2.01 )   $ (2.37 )   $ (0.77 )
Diluted loss per share
  $ (2.01 )   $ (2.37 )   $ (0.77 )
                         
Shares used in computing basic loss per share
    25,514,232       24,916,938       24,036,736  
Shares used in computing diluted loss per share
    25,514,232       24,916,938       24,036,736  
                         
 
See accompanying Notes to Consolidated Financial Statements


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CONSOLIDATED STATEMENTS OF STOCKHOLDERS’ EQUITY (DEFICIT) AND
COMPREHENSIVE LOSS
 
                                                                                 
                                              Accumulated
             
                      Common
    Hedges on
                Other
          Total
 
    Common Stock     Additional
    Stock
    Convertible
    Deferred
    Treasury
    Comprehensive
    Accumulated
    Stockholders’
 
    Shares     Amount     Paid-In Capital     Warrants     Notes     Compensation     Stock     Loss     Deficit     Equity  
 
Balance at April 30, 2004
    23,457,397     $ 234,574     $ 202,769,369     $     $     $ (3,589,265 )   $     $ (646,748 )   $ (129,787,450 )   $ 68,980,480  
                                                                                 
Stock Options exercised
    1,241,889       12,419       16,674,877                                           16,687,296  
Issuance of common stock under Employee Stock Purchase Plan
    82,420       824       1,335,684                                           1,336,508  
Cancellation of restricted stock
    (250 )     (2 )     (6,620 )                 6,622                          
Deferred compensation relating to stock options
                6,417,160                   (6,417,160 )                        
Amortization of deferred compensation and expense of certain stock options
                                  7,103,005                         7,103,005  
Net Loss
                                                    (18,609,507 )     (18,609,507 )
Translation adjustment
                                              98,059             98,059  
                                                                                 
Comprehensive loss
                                                          (18,511,448 )
                                                                                 
Balance at April 29, 2005
    24,781,456       247,815       227,190,470                   (2,896,798 )           (548,689 )     (148,396,957 )     75,595,841  
                                                                                 
Stock options exercised
    637,191       6,371       8,694,565                                           8,700,936  
Issuance of common stock under Employee Stock Purchase Plan
    88,970       890       1,777,939                                           1,778,829  
Issuance of restricted stock
    278,732       2,787       9,651,358                   (9,654,145 )                        
Cancellation of restricted stock
    (5,000 )     (50 )     (174,662 )                 174,712                          
Deferred compensation relating to stock options
                (2,491,477 )                 2,491,477                          
Amortization of deferred compensation and expense of certain stock options
                                  717,661                         717,661  
Purchase of Treasury stock
                                        (9,993,200 )                 (9,993,200 )
Sale of common stock warrants
                      25,200,000                                     25,200,000  
Purchase of convertible note hedge
                            (38,200,000 )                             (38,200,000 )
Net Loss
                                                    (59,069,192 )     (59,069,192 )
Translation adjustment
                                              (101,009 )           (101,009 )
                                                                                 
Comprehensive loss
                                                          (59,170,201 )
                                                                                 
Balance at April 28, 2006,
    25,781,349       257,813       244,648,193       25,200,000       (38,200,000 )     (9,167,093 )     (9,993,200 )     (649,698 )     (207,466,149 )     4,629,866  
                                                                                 
Stock options exercised
    798,074       7,981       9,924,390                                           9,932,371  
Unregistered shares issued
    75,000       750       1,940,250                                           1,941,000  
Issuance of common stock under Employee Stock Purchase Plan
    6,283       63       148,030                                           148,093  
Issuance of Restricted Stock
    52,500       525                                                 525  
Cancellation of Restricted Stock
    (12,152 )     (121 )     121                                            
Transfer of Deferred Compensation Balance (123R adoption)
                (9,167,093 )                 9,167,093                          
Non-cash compensation expense
                18,594,246                                           18,594,246  
Modification of Non-employee Stock Options
                (258,262 )                                         (258,262 )
Excise Tax Remediation
                (221,071 )                                         (221,071 )
Net loss
                                                    (51,180,107 )     (51,180,107 )
Translation adjustment
                                              351,110             351,110  
                                                                                 
Comprehensive loss
                                                          (50,828,997 )
                                                                                 
Balance at April 27, 2007
    26,701,054     $ 267,011     $ 265,608,804     $ 25,200,000     $ (38,200,000 )   $     $ (9,993,200 )   $ (298,588 )   $ (258,646,256 )   $ (16,062,229 )
                                                                                 
 
See accompanying Notes to Consolidated Financial Statements


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CYBERONICS, INC. AND SUBSIDIARY
 
CONSOLIDATED STATEMENTS OF CASH FLOWS
 
                         
    52 Weeks Ended  
    April 27, 2007     April 28, 2006     April 29, 2005  
 
Cash Flows From Operating Activities:
                       
Net loss
  $ (51,180,107 )   $ (59,069,192 )   $ (18,609,507 )
Non-cash items included in net loss:
                       
Depreciation
    3,708,710       3,350,988       3,274,843  
Gain on disposal of assets
    (8,189 )     (81,433 )     (50,066 )
Unrealized (gain) loss in foreign currency transactions
    10,968       (104,542 )     15,758  
Stock-Based Compensation
    19,421,391       717,661       7,103,005  
Amortization of financing costs
    781,638       419,497        
Other non-cash items
    36,432       (232,752 )      
Changes in operating assets and liabilities:
                       
Accounts receivable, net
    2,809,389       (4,995,947 )     747,906  
Inventories
    90,620       (8,767,305 )     (758,512 )
Other current assets
    2,051,878       (1,488,869 )     (668,745 )
Other assets, net
    55,641       (84,653 )     33,435  
Accounts payable and accrued liabilities
    1,703,008       (250,778 )     4,678,684  
Other
    (170,235 )     (288,884 )     263,527  
                         
Net Cash Used In Operating Activities
    (20,688,856 )     (70,876,209 )     (3,969,672 )
                         
Cash Flows From Investing Activities:
                       
Purchase of short-term marketable securities
                (10,400,229 )
Proceeds from sale of short-term marketable securities
          22,800,000       2,500,693  
Restricted cash
          (1,000,000 )      
Purchases of property and equipment
    (1,425,349 )     (4,298,859 )     (3,713,637 )
                         
Net Cash Provided By (Used In) Investing Activities
    (1,425,349 )     17,501,141       (11,613,173 )
                         
Cash Flows From Financing Activities:
                       
Increase (decrease) in borrowing against line of credit
    5,000,000       (500,000 )     (7,031,000 )
Payment related to line of credit origination costs
          (499,814 )      
Payments on financing obligations
    (246,701 )     (192,378 )     (141,066 )
Proceeds from issuance of Convertible Notes, net of issuance costs
          120,700,414        
Additional costs related to Convertible Notes
    (3,557 )            
Sale of Common Stock Warrants
          25,200,000        
Purchase of Convertible Note Hedge
          (38,200,000 )      
Proceeds from issuance of Common Stock
    9,684,666       10,479,765       18,023,804  
Purchase of treasury stock
          (9,993,200 )      
                         
Net Cash Provided By Financing Activities
    14,434,408       106,994,787       10,851,738  
                         
Effect of exchange rate changes on cash and cash equivalents
    129,602       59,460       (56,268 )
                         
Net Increase (Decrease) in Cash and Cash Equivalents
    (7,550,195 )     53,679,179       (4,787,375 )
Cash and cash equivalents at beginning of year
    92,355,071       38,675,892       43,463,267  
                         
Cash and cash equivalents at end of year
  $ 84,804,876     $ 92,355,071     $ 38,675,892  
                         
Supplementary Disclosures of Cash Flow Information:
                       
Cash paid for interest
  $ 4,979,462     $ 2,213,594     $ 416,986  
Cash paid for income taxes
  $ 65,609     $ 98,414     $ 53,312  
Supplemental Disclosure of Non-cash Activity:
                       
Purchases of capital assets with notes payable
  $     $ 497,698     $  
 
See accompanying Notes to Consolidated Financial Statements


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Table of Contents

CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
 
Note 1.   Summary of Significant Accounting Policies and Related Data
 
Nature of Operations.  We are headquartered in Houston, Texas and design, develop, manufacture and market the Cyberonics VNS Therapy Systemtm (“VNS Therapy System”), an implantable medical device which delivers a unique therapy, Vagus Nerve Stimulation, for the treatment of refractory epilepsy, treatment-resistant depression and other debilitating neurological disorders. We have regulatory approval to market and sell the VNS Therapy System for refractory epilepsy in the United States, Canada, Europe, Australia and other markets. In 2001, we obtained regulatory approval for commercial distribution of the VNS Therapy System for the treatment of depression in the European market and in Canada. In July 2005, the Food and Drug Administration (“FDA”) approved the VNS Therapy System as an adjunctive long-term treatment of chronic or recurrent depression for patients 18 years of age or older who are experiencing a major depressive episode and have not had an adequate response to four or more adequate antidepressant treatments.
 
We operate our business as a single segment with similar economic characteristics, technology, manufacturing processes, customers, distribution and marketing strategies, regulatory environments and shared infrastructures. We are a neurostimulation business focused on creating new markets, developing other indications for VNS Therapy covered by our method patents and expanding our business into other neuromodulation opportunities.
 
Consolidation.  The accompanying consolidated financial statements include Cyberonics, Inc. and our wholly-owned subsidiary, Cyberonics Europe, NV, and have been prepared on a going concern basis. All significant intercompany accounts and transactions have been eliminated.
 
Use of Estimates.  The preparation of consolidated financial statements in conformity with accounting principles generally accepted in the United States requires management to make estimates and assumptions that affect the amounts reported in the consolidated financial statements and accompanying Notes. Actual results could differ from those estimates. Critical estimates that require management’s judgment relate to the allowance for doubtful accounts, estimates of any obsolete inventory, useful lives for property and equipment, impairment of any long-lived assets, sales returns and allowances, product warranties, stock option expenses and income tax valuation allowances.
 
Foreign Currency Translation.  The assets and liabilities of Cyberonics Europe, NV are generally translated into U.S. dollars at exchange rates in effect on reporting dates, while capital accounts and certain obligations of a long-term nature payable to the parent company are translated at historical rates. Statement of Operations items are translated at average exchange rates in effect during the financial statement period. The gains and losses that result from this process are shown in the accumulated other comprehensive loss section of stockholders’ equity (deficit) and comprehensive loss, and are not included in the determination of the results of operations. Gains and losses resulting from foreign currency transactions denominated in currency other than the functional currency are included in other income and expense.
 
Cash and Cash Equivalents.  We consider all highly liquid investments with a maturity of three months or less at the time of purchase to be cash equivalents.
 
Restricted Cash.  We classify as restricted cash highly liquid investments that otherwise would qualify as cash equivalents, but that have been set aside as collateral and that are unavailable for immediate withdrawal, until certain conditions are met.
 
Fair Value of Financial Instruments.  The carrying amounts reported in the Consolidated Balance Sheets for cash and cash equivalents, accounts receivable, accounts payable, accrued liabilities and line of credit approximate their fair values due to the short-term maturity of these financial instruments. The fair value of our Convertible Notes is discussed in “Note 7. Convertible Notes.”


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CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

Accounts Receivable.  Activity in our allowance for doubtful accounts consists of the following:
 
                         
    52 Weeks Ended  
    April 27, 2007     April 28, 2006     April 29, 2005  
 
Balance at beginning of year
  $ 234,478     $ 275,457     $ 279,699  
Increase in allowance
    161,652       51,245       75,374  
Reductions for write-offs
    (88,047 )     (92,224 )     (79,616 )
                         
Balance at end of year
  $ 308,083     $ 234,478     $ 275,457  
                         
 
Inventories.  We state our inventories at the lower of cost, first-in first-out (“FIFO”) method or market. Cost includes the acquisition cost of raw materials and components, direct labor and overhead net of obsolescence provisions.
 
Property and Equipment.  Property and equipment are carried at cost, less accumulated depreciation. Maintenance, repairs and minor replacements are charged to expense as incurred; significant renewals and betterments are capitalized. We compute depreciation using the straight-line method over useful lives ranging from two to nine years. Property and equipment under capital leases are stated at the lower of the present value of minimum lease payments at the beginning of the lease term or fair value at the inception of the lease. Property and equipment under capital leases are depreciated using the straight-line method over the shorter of the lease term or the estimated useful life of the property.
 
Leases.  Statement of Financial Accounting Standards Board (“SFAS”) No. 13 “Accounting for Leases” establishes standards of financial accounting and reporting for leases by lessees and lessors. We are a party to the contract of leased facilities and other lease obligations recorded in compliance with SFAS No. 13. The lease terms provide for tenant improvement allowances that are recorded as deferred rent and amortized, straight line, as reduction to rent expense over the term of the lease. At April 27, 2007 and April 28, 2006, we had approximately $152,000 and $209,000 of deferred rent, respectively. Scheduled rent increases and paid holidays are recognized on a straight-line basis over the term of the lease.
 
Long-Lived Assets.  SFAS No. 144, “Accounting for the Impairment or Disposals of Long-Lived Assets” provides a single accounting model for long-lived assets to be disposed of. SFAS No. 144 also establishes the criteria for classifying an asset as held for sale and sets the scope of business to be disposed of that qualifies for reporting as discontinued operations as well as changes the timing of recognizing losses on such operations.
 
Other Current Assets and Other Assets.  Other current assets and other assets include prepaid expenses and Convertible Notes origination costs, which are expensed in the normal course of business over the periods these expenses benefit.
 
Stock Options.  Prior to April 29, 2006, we adopted the disclosure-only provisions of SFAS No. 123, “Accounting for Stock-Based Compensation” (“SFAS No. 123”) and SFAS No. 148, “Accounting for Stock-Based Compensation — Transition and Disclosure” (“SFAS No. 148”). Because of this election, we accounted for our employee stock-based compensation plans under Accounting Principles Board (“APB”) Opinion No. 25, “Accounting for Stock Issued to Employees” (“APB No. 25”) and the related interpretations.
 
We adopted SFAS No. 123 (revised 2004) “Share-Based Payment” (“SFAS 123(R)”) on April 29, 2006 using The Black-Scholes option pricing model and The Modified Prospective Method which requires the compensation cost to be recognized under SFAS 123(R) for grants issued after the adoption date and the unvested portion of grants issued prior to the adoption date. As a result of the adoption of SFAS 123(R), we recognized non-cash share-based compensation expense of approximately $19.4 million during fiscal year 2007 including the impact associated with the resignations of certain former officers and employees. The deferred compensation expense is recorded over the vesting period of each unit of stock-based compensation.


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CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

The following table illustrates the effect on net loss and loss per share if we had applied the fair value recognition provisions of SFAS No. 123 and SFAS No. 148 to stock-based employee compensation.
 
                 
    52 Weeks Ended  
    April 28, 2006     April 29, 2005  
 
Net loss as reported
  $ (59,069,192 )   $ (18,609,507 )
(1)Add: Stock-based employee compensation expense included in reported net loss, net of related tax effects
    717,661       7,103,005  
(1)Deduct: Total stock-based employee compensation expense determined under the fair value method for all awards, net of related tax effects
    (26,384,997 )     (21,924,138 )
                 
Pro forma net loss
  $ (84,736,528 )   $ (33,430,640 )
                 
Loss per share:
               
Basic — as reported
  $ (2.37 )   $ (0.77 )
Basic — pro forma
  $ (3.40 )   $ (1.39 )
Diluted — as reported
  $ (2.37 )   $ (0.77 )
Diluted — pro forma
  $ (3.40 )   $ (1.39 )
 
 
(1) There was no tax effect included in these amounts due to the valuation allowance.
 
Revenue Recognition.  We sell our products through a combination of a direct sales force in the United States and certain European countries and through distributors elsewhere. We recognize revenue when title to the goods and risk of loss transfer to customers, providing there are no remaining performance obligations required of us or any matters requiring customer acceptance. We record estimated sales returns and discounts as a reduction of net sales in the same period revenue is recognized. Our revenues are dependent upon sales to new and existing customers pursuant to our current policies. Changes in these policies or sales terms could impact the amount and timing of revenue recognized.
 
Research and Development.  All research and development costs are expensed as incurred.
 
Product Warranty.  We offer warranties on our leads and generators for one to two years from the date of implant, depending on the product in question. We provide at the time of shipment for costs estimated to be incurred under our product warranties. Provisions for warranty expenses are made based upon projected product warranty claims.
 
Changes in our liability for product warranties during the 52 weeks ended April 27, 2007, April 28, 2006 and April 29, 2005 are as follows:
 
                                 
                      Balance at
 
    Balance at
    Warranty
          the End
 
    the Beginning
    Expense
    Warranties
    of the
 
Year
  of the Year     Recognized     Settled     Year  
 
2007
  $ 46,991     $ 27,037     $ (5,206 )   $ 68,822  
2006
    46,991       10,312       (10,312 )     46,991  
2005
    50,935       29,077       (33,021 )     46,991  
 
License Agreements.  We have executed licensing agreements under which we have secured the rights provided under certain patents. Royalties payable under the terms of these agreements are expensed as incurred.
 
Income Taxes.  We account for income taxes under the asset and liability method. Under this method, deferred income taxes reflect the impact of temporary differences between financial accounting and tax basis of assets and liabilities. Such differences relate primarily to the deductibility of certain accruals and reserves and the


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Table of Contents

 
CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

effect of tax loss and tax credit carryforwards not yet utilized. Deferred tax assets are evaluated for realization based on a more-likely-than-not criterion in determining if a valuation allowance should be provided.
 
Deferred tax assets and liabilities are measured using enacted tax rates expected to apply to taxable income in the years in which those temporary differences are expected to be recovered or settled. The effect on deferred tax assets and liabilities of a change of tax rates is recognized in operations in the period that includes the enactment date.
 
Net Earnings (Loss) Per Share.  SFAS No. 128, “Earnings Per Share” requires dual presentation of earnings per share (“EPS”): basic EPS and diluted EPS. Basic EPS is computed by dividing net earnings or loss applicable to common stockholders by the weighted average number of common shares outstanding for the period. Diluted EPS includes dilutive stock options and unvested restricted stock that are considered common stock equivalents using the treasury stock method.
 
The following table sets forth the computation of basic and diluted net loss per share of common stock:
 
                         
    For the 52 Weeks Ended  
    April 27, 2007     April 28, 2006     April 29, 2005  
 
Numerator:
                       
Net loss
  $ (51,180,107 )   $ (59,069,192 )   $ (18,609,507 )
                         
Denominator:
                       
Basic weighted average shares outstanding
    25,514,232       24,916,938       24,036,736  
                         
Effect of dilutive securities
                 
                         
Diluted weighted average shares outstanding
    25,514,232       24,916,938       24,036,736  
                         
Basic loss per share
  $ (2.01 )   $ (2.37 )   $ (0.77 )
Diluted loss per share
  $ (2.01 )   $ (2.37 )   $ (0.77 )
 
Excluded from the computation of diluted EPS for the 52 weeks ended April 27, 2007, April 28, 2006 and April 29, 2005 were outstanding options and unvested restricted stock to purchase approximately 5.6 million, 7.3 million and 6.9 million common shares, respectively, because to include them would have been anti-dilutive due to the net loss.
 
We issued $125.0 million of Senior Subordinated Convertible Notes due in 2012 (“Convertible Notes”) during fiscal 2006 and, in conjunction with the Convertible Notes, purchased Call Options (the “Note Hedge”) and sold common stock warrants (“Warrants”). The Convertible Notes are convertible into approximately 3,000,000 shares of our common stock. Dilution is measured in accordance with the “if converted” method of SFAS No. 128, “Earnings Per Share,” which assumes conversion of the Convertible Notes and adjusts net earnings (loss) for interest expense net of tax; however, due to net losses, the Convertible Notes are anti-dilutive and are not included in the computation of diluted EPS. We purchased the Note Hedge to buy approximately 3,000,000 shares of our common stock at an exercise price of $41.50 per share. Purchased call options are anti-dilutive and are not included in the computation of diluted EPS. We issued Warrants to sell approximately 3,000,000 shares of our common stock at an exercise price of $50.00 per share. In accordance with the treasury stock method of SFAS No. 128, “Earnings Per Share,” the Warrants are not included in the computation of diluted EPS because the Warrants’ exercise price was greater than the average market price of the common stock.
 
Comprehensive Loss.  Comprehensive loss is the total of net loss and all other non-owner changes in equity.


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CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

Note 2.   Going Concern
 
The accompanying consolidated financial statements have been prepared assuming that we will continue as a going concern. Since inception, we have incurred an accumulated deficit of approximately $258.6 million. We have incurred substantial expenses, primarily for research and development activities that include product and process development, clinical trials and related regulatory activities, sales and marketing activities, manufacturing start-up costs and systems infrastructure. For the fiscal years ended April 27, 2007, April 28, 2006 and April 29, 2005, we had a net loss of $51.2 million and $59.1 million and $18.6 million, respectively. To fund our operations in fiscal 2006, we incurred additional indebtedness through the issuance of $125.0 million of Convertible Notes and the establishment of a $40.0 million line of credit (“Credit Agreement”). In July 2006, we received a notice of default and demand letter (“Notice of Default”) from Wells Fargo Bank, National Association (the “Trustee”), pursuant to which the Trustee asserted that we were in default of our obligations under the Indenture dated September 27, 2005 (“Indenture”), between us, as issuer, and the Trustee, as trustee, with respect to our Convertible Notes, as a result of our failure (1) to file with the SEC our Annual Report on Form 10-K for the fiscal year ended April 28, 2006 (“2006 Form 10-K”) by July 12, 2006 and (2) to deliver a copy of the 2006 Form 10-K to the Trustee by July 27, 2006. In October 2006, we received a notice of acceleration and demand letter (“Notice of Acceleration”) from the Trustee informing us that, pursuant to the Indenture, the Trustee declared the Convertible Notes due and payable at their principal amount, together with accrued and unpaid interest, and fees and expenses, and demanding that all such principal, interest, fees and expenses under the Convertible Notes be paid to the Trustee immediately. We believe that no default occurred under the Indenture and, on June 13, 2007, a federal district court granted summary judgment to Cyberonics and declared that no default occurred under the Indenture. In its court filings, the Trustee stated that it was seeking approximately $20.0 million in damages plus interest and attorney fees, but it reserved the right to seek immediate payment of full value of the Convertible Notes. The Trustee has not appealed the district court’s decision; however, if the Trustee appeals the district court’s decision, and if the court of appeals reverses the district court’s decision and determines that a default occurred under the Indenture, then all unpaid principal and accrued interest on the outstanding Convertible Notes could be due and payable. Accordingly, until this matter is resolved, we have included them as a current liability on our Consolidated Balance Sheets as of April 27, 2007 and April 28, 2006. In addition, if an event of default has occurred under the Indenture, we would also be in default of the $40.0 million Line of Credit. If principal and interest on our indebtedness must be repaid immediately, we do not have the cash resources available to repay the debt. If we were not able to renegotiate the terms of the indenture or to secure additional financing, this could raise substantial doubt regarding our ability to continue as a going concern. The accompanying consolidated financial statements do not include any adjustments that might result from the outcome of this uncertainty.
 
Note 3.   Inventories
 
Inventories consist of the following:
 
                 
    April 27, 2007     April 28, 2006  
 
Raw materials
  $ 9,205,449     $ 10,709,541  
Finished goods
    6,702,196       4,960,028  
Work-in-process
    1,673,185       1,635,225  
                 
    $ 17,580,830     $ 17,304,794  
                 


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Table of Contents

 
CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

Note 4.   Property and Equipment
 
Property and equipment consist of the following:
 
                 
    April 27, 2007     April 28, 2006  
 
Computer equipment
  $ 9,164,999     $ 9,158,340  
Manufacturing equipment
    8,788,850       8,057,989  
Leasehold improvements
    4,218,858       4,040,486  
Furniture and fixtures
    3,518,179       3,735,069  
Office equipment
    1,415,515       1,417,397  
Construction in progress
    528,149       1,145,828  
                 
      27,634,550       27,555,109  
Accumulated depreciation
    (19,606,513 )     (17,232,820 )
                 
    $ 8,028,037     $ 10,322,289  
                 
 
Note 5.   Line of Credit
 
On January 13, 2006, we established a $40.0 million Credit Agreement. The Credit Agreement has a three-year term ending January 13, 2009 and is collateralized by accounts receivable, inventory, subsidiary stock, general intangibles, equipment and other collateral. The collateral does not include our intellectual property and provides the lender only limited rights and remedies with respect to the funds raised in our September 2005 offering of Convertible Notes. We agreed to maintain a minimum liquidity of $25.0 million, which is defined as the sum of the revolving loan limit minus the revolving loan outstanding plus the unrestricted cash and cash equivalent balances and provide periodic certifications of compliance in connection with the Credit Agreement. The amount available under the Credit Agreement is limited to 85% of the eligible accounts receivable and a portion of eligible inventory. As of April 27, 2007, our available borrowing capacity was approximately $19.8 million with a loan balance of $7.5 million.
 
Interest is payable at a base rate offered for loans in United States dollars for the period of one month under the British Bankers Association LIBOR rates, plus a base margin rate of 1.75% on the greater of the outstanding loan balance or the minimum agreed-upon loan balance. The rates effective as of April 27, 2007 and April 28, 2006 were a LIBOR rate of 5.32% and a base rate margin of 1.75% for a combined rate of 7.07% and a LIBOR rate of 4.97% and a base rate margin of 1.75% for a combined rate of 6.72%, respectively. The minimum loan balance is $2.5 million through May 31, 2006; $5.0 million through September 30, 2006; $7.5 million through January 31, 2007 and $10.0 million through January 13, 2009. The fees associated with the credit facility include a one-time commitment fee of $400,000, a collateral fee ranging from 0.25% — 1.0% of the outstanding loan balance and other usual and customary fees associated with this type of facility.
 
On April 29, 2005, we had a revolving credit facility of $20.0 million with a one-year term that ended in September 2005. The credit facility was collateralized by accounts receivable, inventory, equipment, documents of title, general intangibles, subsidiary stock and other collateral. The amount available to borrow under the facility was limited to 80% of eligible accounts receivable and a portion of eligible inventory. As of April 29, 2005, the eligible balance of our accounts receivable was approximately $13.5 million. We had borrowings of $3.0 million outstanding under the credit facility and an available borrowing capacity of approximately $7.8 million. Interest was payable in the amount of the Chase Bank rate of 5.75% on the greater of $3.0 million or the average of the net balance owed by us at the close of each day during the period. Under the terms of the revolving credit facility, we agreed to maintain liquidity (being the aggregate of availability under the credit facility and our cash on hand) equal to or greater than $10.0 million. An unused line of credit fee was payable at the rate of 0.5%.


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Table of Contents

 
CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

As disclosed by us in a Notification of Late Filing on Form 12b-25 filed on September 1, 2006, we were not able to file our First Quarter Form 10-Q pending completion of the Audit Committee’s review of previous option grants and resolution of any disclosure and accounting issues arising from the results of the review. On October 31, 2006, we entered into a Consent and Amendment Agreement with the Administrative Agent and Lenders providing that certain events will not constitute a default under the Credit Agreement prior to December 31, 2006. Such events included, among other events, (1) our failure to file timely with the SEC our 2006 Form 10-K and our quarterly reports on Form 10-Q, including the First Quarter Form 10-Q; (2) our failure to maintain compliance with the NASDAQ listing standards because of our failure to file such SEC reports and (3) our receipt of a Notice of Default from the Trustee in connection with the Indenture as a result of our failure to timely file and deliver our 2006 Form 10-K as purportedly required by the Indenture, so long as there is no determination by a court and we have not otherwise acknowledged that a default has occurred under the Indenture.
 
On December 29, 2006, we entered into a Consent and Amendment Agreement with the Administrative Agent and Lenders which provided that the failure to file timely with the SEC our 2006 Form 10-K will not constitute a default under the Credit Agreement prior to January 8, 2007. The Consent and Amendment Agreement with the Administrative Agent and Lenders further provided that certain events will not constitute a default under the Credit Agreement prior to February 28, 2007. Such events include, among other events, (1) failure to file timely with the SEC our 2006 quarterly reports on Form 10-Q, including our Quarterly Report on Form 10-Q for the period ended July 28, 2006 (“First Quarter Form 10-Q”) and our Quarterly Report on Form 10-Q for the period ended October 27, 2006 (“Second Quarter Form 10-Q”); (2) our failure to maintain compliance with the NASDAQ listing standards because of our failure to file such SEC reports; and (3) our receipt of the Notice of Default from the Trustee in connection with the Indenture as a result of our failure to file and deliver our 2006 Form 10-K as purportedly required by the Indenture, so long as there is no determination by a court, and we have not otherwise acknowledged, that a default has occurred under the Indenture. The Consent and Amendment Agreement further provided that, for the term of the Consent and Amendment Agreement, our borrowing under the line of credit is limited to $7.5 million. As of April 27, 2007, loans aggregating $7.5 million in principal amount were outstanding under the Credit Agreement. Effective February 1, 2007, we are required to pay interest based on the minimum agreed-upon loan balance of $10.0 million, but we cannot borrow more than $7.5 million in principal amount until the Trustee withdraws the Notice of Default or a court determines that a default in connection with the Indenture has not occurred.
 
Note 6.   Accrued Liabilities
 
Accrued liabilities consist of the following:
 
                 
    April 27, 2007     April 28, 2006  
 
Payroll and other compensation
  $ 7,279,726     $ 6,839,060  
Clinical costs
    2,746,677       529,582  
Professional services
    1,214,821       680,683  
Royalties
    922,221       1,061,893  
Tax accruals
    807,909       963,426  
Other
    1,872,912       2,581,326  
                 
    $ 14,844,266     $ 12,655,970  
                 
 
In April 2007, the Board of Directors approved a reduction in force with an approximate accrued cost of $1.5 million. As of April 27, 2007, $0.7 million remained unpaid and accrued.


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Table of Contents

 
CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

Note 7.   Convertible Notes
 
On September 27, 2005, we issued $125 million of Convertible Notes. Interest on the Convertible Notes at the rate of 3% per year on the principal amount is payable semi-annually in arrears in cash on March 27 and September 27 of each year beginning March 27, 2006. The Convertible Notes are unsecured and subordinated to all of our existing and future senior debt and equal in right of payment with our existing and future senior subordinated debt. Holders may convert their Convertible Notes, which were issued in the form of $1,000 bonds, into 24.0964 shares of our common stock per bond, which equal to a conversion price of approximately $41.50 per share, subject to adjustments, at any time prior to maturity. Holders who convert their Convertible Notes in connection with certain fundamental changes may be entitled to a make-whole premium in the form of an increase in the conversion rate. A fundamental change will be deemed to have occurred upon a change of control, liquidation or a termination of trading. The make-whole premium, depending on the price of the stock and the date of the fundamental change, may range from 6.0241 to 0.1881 shares per bond, when the stock price ranges from $33.20 to $150.00, respectively. If a fundamental change of our company occurs, the holder may require us to purchase all or a part of their Convertible Notes at a price equal to 100% of the principal amount of the Convertible Notes to be purchased plus accrued and unpaid interest, if any. We may, at our option, instead of paying the fundamental change purchase price in cash, pay it in our common stock valued at a 5% discount from the market price of our common stock for the 20 trading days immediately preceding and including the third day prior to the date we are required to purchase the Convertible Notes, or in any combination of cash and shares of our common stock. This offering provided net proceeds of approximately $121 million. We used the proceeds for (1) a simultaneous share buyback of 301,000 shares at $33.20 for a total of $10.0 million and (2) the net cost of $13.0 million related to the Note Hedge and Warrants, which transactions were designed to limit our exposure to potential dilution from conversion of the Convertible Notes. These transactions resulted in net cash proceeds of approximately $98.3 million. The estimated fair value of the Convertible Notes as of April 27, 2007 and April 28, 2006 was $115.0 million and $107.0 million, respectively. Market quotes obtained from brokers were used to estimate the fair value of this debt.
 
On September 27, 2005, we entered into a registration rights agreement (the “Registration Rights Agreement”) in connection with our issuance of the Convertible Notes. Under the Registration Rights Agreement, we were required to file a registration statement for the Convertible Notes and the shares into which the Convertible Notes are convertible on or before July 14, 2006 and to use reasonable best efforts to cause the registration statement to become effective on or before October 12, 2006. Due to delays in completing our consolidated financial statements for the fiscal year ended April 28, 2006, we did not file the required registration statement. As a result of failing to file the registration statement on a timely basis, we are obligated by the terms of the Registration Rights Agreement to pay specified liquidated damages to the holders of the Convertible Notes for the period during which the failure continues. Such liquidated damages per year equal 0.25% of the principal amount of the outstanding Convertible Notes during the first 90-day period (a total of $78,125 for the first 90 days) and 0.50% of the principal amount of the outstanding Convertible Notes for the period commencing 91 days following the failure to file the registration statement (an additional $156,250 for each 90-day period during which the failure to obtain the effectiveness of the registration statement continues). The liquidated damages are payable in arrears on each date on which interest payments are payable. As of April 27, 2007, approximately $56,000 has been accrued in accrued liabilities and is recorded in the Consolidated Balance Sheets. Liquidated damages were not applicable in fiscal 2006.
 
Convertible Notes Indenture Default Notice
 
Pursuant to the Indenture, we are required to deliver to the Trustee “within 15 days after we file them” with the SEC copies of all Annual Reports on Form 10-K and other information, documents and other reports that we are required to file with the SEC pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934, as amended (“Exchange Act”). In July 2006, we received the Notice of Default from the Trustee, pursuant to which the Trustee asserted that we are in default under the Indenture as a result of our failure (1) to file with the SEC our 2006 Form 10-K by July 12, 2006 and (2) to deliver a copy of the 2006 Form 10-K to the Trustee by July 27, 2006. In October 2006, we received the Notice of Acceleration from the Trustee informing us that, pursuant to the Indenture,


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Table of Contents

 
CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

the Trustee has declared the Convertible Notes due and payable at their principal amount, together with accrued and unpaid interest, and fees and expenses, and demanding that all such principal, interest, fees and expenses under the Convertible Notes be paid to the Trustee immediately.
 
We believe that no default occurred under the Indenture. In June 2007, a federal district court declared that no default occurred under the Indenture. For a detailed description of the lawsuit, refer to “Note 15. — Litigation — Indenture Default Litigation.” The Trustee has not appealed the district court’s decision. If the Trustee appeals the district court’s decision and if the court of appeals reverses the district court’s decision, then a default will have occurred under the Indenture. If a default occurred under the Indenture, then all unpaid principal and accrued interest on the outstanding Convertible Notes will be due and payable immediately unless we negotiate an amendment to the terms of the Indenture. Until this matter is finally resolved, we have included these Convertible Notes as a current liability on our consolidated balance sheets as of April 27, 2007 and April 28, 2006.
 
Note 8.   Convertible Note Hedge and Warrants
 
On September 27, 2005, we issued $125 million of Convertible Notes, purchased the Note Hedge and sold Warrants. The Convertible Notes are convertible into approximately 3,000,000 shares of our common stock. We purchased the Note Hedge to enable the purchase of approximately 3,000,000 shares of our common stock at an exercise price of $41.50 per share. We issued the Warrants to sell approximately 3,000,000 shares of our common stock at an exercise price of $50.00 per share. The purpose of the purchase of the Note Hedge and the sale of the Warrants was to limit our exposure to potential dilution from conversion of the Convertible Notes subject to the Note offering. The Note Hedge and the Warrants are recorded in stockholders’ equity on the consolidated balance sheet.
 
Note 9.   Stockholders’ Equity (Deficit)
 
Preferred Stock.  We have 2,500,000 shares of undesignated Preferred Stock authorized and available for future issuance, of which none have been issued through April 27, 2007. With respect to the shares authorized, our Board of Directors, at its sole discretion, may determine, fix and alter dividend rights, dividend rates, conversion rights, voting rights, terms of redemption, redemption prices, liquidation preferences and the number of shares constituting any such series and may determine the designation, terms and conditions of the issuance of any such shares.
 
Preferred Share Purchase Rights.  In January 1997, our Board of Directors declared a dividend of one Preferred Share Purchase Right (“Right”) on each outstanding share of our common stock to stockholders of record on March 10, 1997. We amended and restated the Preferred Share Rights (“Plan”) on August 21, 2000. The Rights will become exercisable following the tenth day after a person or group of affiliated persons (an “Acquiring Person”), acquires beneficial ownership of 15% or more of our common stock or announces commencement of a tender offer, the consummation of which would result in such person or group of persons becoming an Acquiring Person (a “Triggering Event”). Each Right entitles the holder thereof to buy 1/1000 of a share of our Series A Participating Preferred Stock at an exercise price of $150 (the “Exercise Price”). We will be entitled to redeem the Rights at $.01 per Right at any time prior to a Triggering Event. If, prior to redemption of the Rights, a person becomes an Acquiring Person, each Right (except for Rights owned by the Acquiring Person, which will thereafter be void) will entitle the holder thereof to purchase, at the Right’s then current exchange price, that number of shares of our common stock, or, in certain circumstances as determined by our Board, cash, other property or other securities having a market value at that time of twice the Right’s exercise price. In the event a person becomes an Acquiring Person and we sell more than 50% of our assets or earning power or we are acquired in a merger or other business combination, proper provision must be made so that a holder of a Right which has not theretofore been exercised (except for Rights owned by the Acquiring Person, which will thereafter be void), will thereafter have the right to receive, upon exercise of a Right, shares of common stock of the acquiring company having a value equal to two times the then current Exercise Price. At any time after a Triggering Event and prior to acquisition by such Acquiring Person of 50% or more of the outstanding common stock, our Board of Directors may exchange the Rights (other than Rights owned by the Acquiring Person or its affiliates) for our common stock at an exchange ratio of one share of common stock per Right.


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CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

In April 2001, we amended the Plan to designate the State of Wisconsin Investment Board (“SWIB”) as an Exempt Person under the terms of the Plan as long as SWIB is the Beneficial Owner of less than 20%. In December 2003, we amended the Plan to designate Boston Scientific Corporation (“BSX”) as an Exempt Person under the terms of the Plan as long as BSX is the Beneficial Owner of less than 20% of our common stock, or such percentage that is less than 20% as shall be held by BSX as of the close of business on January 15, 2004. In January 2007, we amended the Plan to extend the final expiration date of the Plan to January 29, 2010.
 
Note 10.   Stock Incentive and Purchase Plans
 
Stock Options.  We adopted SFAS 123(R) effective April 29, 2006 using The Black-Scholes option pricing model and The Modified Prospective Method which requires the compensation cost to be recognized under SFAS 123(R) for grants issued after the adoption date and the unvested portion of grants issued prior to the adoption date. Prior to April 29, 2006, we adopted the disclosure-only provisions of SFAS No. 123 and SFAS No. 148. Because of this election, we accounted for our employee stock-based compensation plans under APB 25 and the related interpretations. The calculation of grant date fair market value requires judgment, as several of the factors used must be estimated, including stock price volatility and employee stock option exercise behavior.
 
As of April 27, 2007, we have reserved an aggregate of 15,250,000 shares of common stock for issuance pursuant to our 1988 Stock Option Plan, 1996 Stock Option Plan, 1997 Stock Option Plan, 1998 Stock Option Plan, Amended and Restated New Employee Equity Inducement Plan and the 2005 Stock Option Plan (collectively, the “Stock Option Plans”). Options granted under the Stock Option Plans generally vest monthly over four or five years following their date of grant. The vesting of certain options occurs up to eight years from the grant date. Options granted under the Stock Option Plans have maximum terms of 10 years. The 1997 Stock Option Plan, the Amended and Restated New Equity Inducement Plan and the 2005 Stock Option Plan allow issuance of either nonstatutory or incentive stock options and restricted stock, while the 1996 and the 1998 Stock Option Plans provide for issuance of nonstatutory stock options exclusively. For the 52 weeks ended April 27, 2007, we granted 156,250 options at a weighted average exercise price of approximately $22.78 per share. In compliance with the provisions of our stock option plans, stock option grant prices are equal to the closing price of our common stock on the last trading day prior to the grant date. Stock option fair values are calculated using the closing stock price on the day of grant. Stock options to purchase approximately 5.5 million shares at a weighted average exercise price of $20.62 per share were outstanding as of April 27, 2007.
 
Amounts recognized in the consolidated financial statements for share-based compensation are as follows:
 
                         
    For the 52 Weeks Ended  
    April 27, 2007     April 28, 2006     April 29, 2005  
 
Total cost of share-based payment plans during the year
  $ 19,796,954     $ 717,661     $ 7,103,005  
Amounts capitalized in inventory and fixed assets during the year
    (915,111 )            
Amounts recognized in operations for amounts previously capitalized in inventory and fixed assets
    539,548              
                         
Amounts charged against operations, before income tax benefit
  $ 19,421,391     $ 717,661     $ 7,103,005  
Amount of related income tax benefit recognized in operations
                 
 
There is no income tax benefit recognized due to the deferred tax valuation allowance. The non-cash charges applicable to share-based compensation increased cost of goods sold by $0.7 million, sales, general and administrative expenses by $15.4 million, which includes $3.7 million applicable to the resignations of the Chief Executive Officer (“CEO”) and Chief Financial Officer (“CFO”) in the third quarter of fiscal 2007, and research and development by $3.3 million during the 52 weeks ended April 27, 2007.


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CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

The following table summarizes information regarding total stock option activity for the 52 weeks ended April 27, 2007 and April 28, 2006:
 
                                                                                 
    For the 52 Weeks Ended  
    April 27, 2007     April 28, 2006  
                Wtd. Avg.
    Wtd. Avg.
                            Wtd. Avg.
       
          Wtd. Avg.
    Fair
    Remaining
    Aggregate
          Wtd. Avg.
    Wtd. Avg.
    Remaining
    Aggregate
 
    Number
    Exercise
    Market
    Contractual
    Intrinsic
    Number of
    Exercise
    Fair Market
    Contractual
    Intrinsic
 
Options
  of Shares     Price     Value     Term     Value     Shares     Price     Value     Term     Value  
 
Outstanding — beginning of year
    6,839,578     $ 20.18     $ 15.54             $ 32,873,282       6,923,046     $ 17.93     $ 13.98             $ 42,485,418  
Granted
    156,250       22.78       11.36               173,443       1,120,513       35.65       26.48                
Exercised
    798,074       11.95       9.53               7,221,524       637,090       13.66       11.02               12,360,044  
Forfeited
    497,481       25.72       19.34               1,033,370       557,208       30.49       22.99               1,232,491  
Expired
    230,910       27.91       21.20               373,183       9,683       39.01       29.11               5,154  
Outstanding — end of year
    5,469,363       20.62       15.72       4.47       23,467,483       6,839,578       20.18       15.54       4.39       35,351,864  
Fully Vested and Exercisable — end of year
    4,329,499       18.72       14.45       3.61       21,610,813       4,302,595       17.18       13.35       3.57       28,344,613  
Expected to vest — end of year
    979,820       28.25       20.74       7.81       1,480,270       2,174,605       25.95       19.72       8.24       5,856,553  
 
For the 52 weeks ended April 29, 2005, we granted approximately 1.5 million share options at a weighted average fair market value of $22.75 with an aggregate intrinsic value of $22.9 million as of April 29, 2005. Approximately 1.2 million share options at an aggregate intrinsic value of approximately $30.5 million were exercised and shares with a fair value of $17.6 million vested during the 52 weeks ended April 29, 2005.
 
We use the Black-Scholes option pricing methodology to calculate the grant date fair market value of stock option grants and nonvested share grants. There are no post-vesting restrictions on the shares issued. This methodology takes into account variables such as implied volatility, dividend yield rate, expected option term and risk-free interest rate. The expected term is based upon observation of actual time elapsed between the date of grant and the exercise of options per group of employees.
 
The following table lists the assumptions used to estimate the grant date fair market value of our stock option grants for the 52 weeks ended April 27, 2007, April 28, 2006 and April 29, 2005:
 
                 
        Per APB 25 and Pro Forma Disclosure
Per FAS 123(R)   Requirements of SFAS 123 and SFAS 148
For the 52 Weeks Ended   For the 52 Weeks Ended
    April 27, 2007       April 28, 2006   April 29, 2005
 
Dividend Yield
    Dividend Yield    
Risk-free interest rate — per grant date   4.51% - 5.23%   Risk-free interest rate — rolling 12 months   3.85%   3.59%
Expected option term — in years per group of employees   4.98 - 6.96   Expected option term — in years for the company as a whole   6.24   5.74
Implied volatility at grant date   32.10% - 54.47%   Historic Volatility at the end of each reporting period   84.58%   88.08%
Discount for post-vesting restrictions   None   Discount for post-vesting restrictions   None   None
Option price
  Closing price on last trading day prior to date of grant   Option price   Closing price on last trading day prior to date of grant   Closing price on last trading day prior to date of grant
Grant price
  Closing price on date of grant   Grant Price   Closing price on last trading day prior to date of grant   Closing price on last trading day prior to date of grant


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CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

Total compensation cost for the 52 weeks ended April 27, 2007 for the stock options was approximately $15.6 million. As of April 27, 2007, there was approximately $20.3 million of unrecognized compensation cost related to unvested stock options which is expected to vest over a weighted-average period of 2.81 years.
 
During the 52 weeks ended April 27, 2007, April 28, 2006 and April 29, 2005, stock options with a fair market value of $19.7 million, $20.7 million and $17.6 million vested, respectively.
 
Cash received from option exercises under all share-based payment arrangements for the 52 weeks ended April 27, 2007, April 28, 2006 and April 29, 2005 was approximately $9.5 million, $8.7 million and $16.7 million, respectively. Cash received from Employees’ Stock Purchase Plan for the 52 weeks ended April 27, 2007, April 28, 2006 and April 29, 2005 was approximately $0.2 million, $1.8 million and $1.3 million, respectively. We have realized no tax benefit for the tax deductions from option exercise of share-based payment arrangements. We did not settle any equity instruments granted under share-based payment arrangements for cash for any of the periods presented herein.
 
We have not repurchased common shares for the purpose of satisfying share-based compensation obligations. We issued new shares upon exercise of stock option grants.
 
Restricted Stock, Restricted Stock Units and Other Share-Based Awards.  We may grant restricted stock, restricted stock units or stock awards to certain employees and directors. The shares typically vest over a period of one to five years from the date of issue. In August 2005, we executed an employment agreement with Robert P. Cummins, our former CEO, President and Chairman of the Board. This employment agreement provided that we would use our best efforts to issue an additional 75,000 shares of restricted stock on the first and second anniversaries of its execution. This was a liability classified award due to the provisions of his employment agreement. Mr. Cummins’ employment agreement terminated with his resignation on November 17, 2006, resulting in the reversal of a $1.0 million liability that had been previously recognized for the above restricted stock.
 
Nonvested restricted stock is issued to grantees on the date of the grant, entitling them to dividends, if any, and voting rights for their respective shares. Sale or transfer of the shares is restricted until they are vested. The fair market value of the restricted shares at grant date is amortized ratably over the requisite service period which is one to five years. As of April 27, 2007, our unamortized compensation expense for these grants totaled $3.0 million which is expected to be amortized over a weighted average period of 4.04 years. We recognized $3.0 million of compensation expense related to these grants during the 52 weeks ended April 27, 2007. We recognized $2.3 million and $0.7 million of compensation expense related to these grants during the 52 weeks ended April 28, 2006 and April 29, 2005, respectively.
 
The following table details the activity in the nonvested restricted stock awards for the 52 weeks ended April 27, 2007 and April 28, 2006:
 
                                                 
    For the 52 Weeks Ended  
    April 27, 2007     April 28, 2006  
          Wtd. Avg.
    Aggregate
          Wtd. Avg.
    Aggregate
 
    Number of
    Grant Date
    Intrinsic
    Number of
    Grant Date
    Intrinsic
 
    Shares     Fair Value     Value     Shares     Fair Value     Value  
 
Outstanding — beginning of period
    270,889     $ 36.10     $ 6,011,027           $     $  
Granted
    52,500       20.89       1,164,975       278,732       36.16       6,327,216  
Vested
    150,220       37.75       3,333,382                    
Forfeited
    28,309       35.29       628,177       7,843       38.30       178,036  
Outstanding — end of period
    144,860       29.03       3,214,443       270,889       36.10       6,149,180  
 
Employee Stock Purchase Plan.  Under our 1991 Employee Stock Purchase Plan of Cyberonics, Inc. (“Stock Purchase Plan”), 950,000 shares of our common stock have been reserved for issuance. Subject to certain limits, the


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CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

Stock Purchase Plan allows eligible employees to purchase shares of our common stock through payroll deductions of up to 15% of their respective current compensation at a price equaling 95% of the fair market value of our common stock on the last business day of the purchase period. Purchase periods, under provisions of the Stock Purchase Plan, are six months in length and begin on the first business days of June and December. At April 27, 2007, 413,874 shares remain available for future issuances under the Stock Purchase Plan. No compensation expense is recorded for the employee stock purchase plan.
 
Modifications.  After we failed to file our 2006 Form 10-K by July 27, 2006, our registration statements on Form S-8 for the Stock Purchase Plan and our Stock Option Plans became ineffective, and between July 27, 2006 and February 9, 2007, we were unable to issue stock under either plan. As a result of our inability to issue stock under the Stock Option Plans, we amended the stock option agreements for certain grants that would otherwise have expired to extend the exercise or expiration period during the 39 weeks ended January 26, 2007. This modification impacted approximately 142,000 options that were issued to 18 ex-employees and approximately 45,000 options issued to five active employees and resulted in compensation expense of approximately $120,000 for the 52 weeks ended April 27, 2007 and derivative expense of approximately $147,000. With the filing of our Form 10-Q for the period ended October 27, 2006 on February 9, 2007, we became current in our filings and were again able to issue stock under the plans. No further amendments were required.
 
Section 409A of the Internal Revenue Code (“IRC”) imposes an excise tax on a grantee’s gain from the exercise of a stock option granted with an exercise price less than the fair market value of the common stock on the date of the grant. The excise tax applies only to that portion of a grant that vests after December 31, 2004, and any grants that vest after December 31, 2004 and are exercised on or before December 31, 2005 are exempt from the excise tax. The proposed regulations under Section 409A permit a grantee to avoid the excise tax by adjusting the exercise price for an affected grant up to the fair market value on the date of the grant. As to Section 16 officers, the adjustment was required to be implemented by December 31, 2006. As to non-Section 16 officers, the adjustment must be implemented by December 31, 2007.
 
As discussed in “Note 15. Litigation — Governmental Investigations of Options Granting Practices,” the Audit Committee concluded that incorrect measurement dates were used for certain of our stock option grants. Unless the exercise price for certain of these grants is adjusted to the fair market value on the date of the grant, the grantees will be subject to an excise tax under Section 409A. In December 2006, we entered into agreements with four current and former Section 16 officers, not including members of our Board, Robert P. Cummins, former CEO, President and Chairman of the Board or Pamela B. Westbrook, former CFO, agreeing to make payments commencing in January 2008 in consideration of the officers’ agreement to amend their affected stock option agreements to adjust the exercise price to the fair market value on the date of the grant. At the same time, we also entered into agreements with Ms. Westbrook and five current and former members of our Board amending their affected stock option agreements, without any payment from us, to adjust the exercise price to the fair market value on the date of the grant.
 
During December 2006, we entered into agreements with ten Section 16 officers including members of our Board and Ms. Westbrook to correct the exercise price on options representing approximately 182,000 shares impacted by Section 409A of the IRC. The cost associated with the remediation applicable to the grants impacted by Section 409A will be approximately $0.4 million, of which we recognized the vested portion that represents approximately $0.3 million during the 52 weeks ended April 27, 2007.
 
On November 17, 2006, Mr. Robert Cummins resigned his position as Chairman of the Board, President and CEO. His resignation agreement provided for the acceleration of all outstanding nonvested restricted stock and stock options. Due to these provisions, we accelerated the vesting of 80,000 nonvested shares and approximately 172,000 stock options and recognized additional expenses in the amount of approximately $2.7 million during the 52 weeks ended April 27, 2007. In addition, we recognized expenses in the amount of $1.9 million applicable to the issuance of 75,000 unregistered shares that vested immediately.


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CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

On November 19, 2006, Ms. Pamela Westbrook resigned her position as CFO. Her resignation agreement provided for the acceleration of stock options and nonvested shares that would have vested within the 12 months following her date of resignation. Due to these provisions, we accelerated the vesting of 1,000 nonvested shares and approximately 11,000 stock options and recognized additional expenses in the amount of approximately $0.1 million for the 52 weeks ended April 27, 2007.
 
The adoption of SFAS 123(R) on April 29, 2006 had the following effects on our operations and cash flows:
 
                         
    For the 52 Weeks Ended April 27, 2007  
    Without
    Effect of
       
    SFAS 123(R)     SFAS 123(R)     As reported  
 
Loss from continuing operations
  $ (35,154,136 )   $ (14,372,359 )   $ (49,526,495 )
Loss before income taxes
    (36,728,973 )     (14,372,359 )     (51,101,332 )
Net loss
    (36,807,748 )     (14,372,359 )     (51,180,107 )
Cash flow used in operations
    (20,688,856 )           (20,688,856 )
Cash flow provided by financing activities
    14,434,408             14,434,408  
Basic loss per share
    (1.45 )     (0.56 )     (2.01 )
Diluted loss per share
    (1.45 )     (0.56 )     (2.01 )
 
The $14.4 million effect of the adoption of SFAS 123(R) is net of $0.7 million, that would have been recorded under the intrinsic value method had we continued to apply APB No. 25 for stock-based compensation expenses, $4.2 million for restricted stock and $0.1 million for stock option grants modifications.
 
The following table illustrates the effect on net loss and loss per share if we had applied the fair market value recognition provisions of SFAS 123(R) for the 52 weeks ended April 28, 2006 and April 29, 2005.
 
                 
    For the 52 Weeks Ended  
    April 28, 2006     April 29, 2005  
 
Net loss as reported
  $ (59,069,192 )   $ (18,609,507 )
(1)Add: Stock-based employee compensation expense included in net loss, net of tax effects
    717,661       7,103,005  
(1)Deduct: Total stock-based employee compensation expenses determined under the fair value method for all awards, net of related tax effects
    (26,384,997 )     (21,924,138 )
                 
Pro-forma net loss
  $ (84,736,528 )   $ (33,430,640 )
                 
Loss per share:
               
Basic — as reported
  $ (2.37 )   $ (0.77 )
Basic — pro-forma
  $ (3.40 )   $ (1.39 )
Diluted — as reported
  $ (2.37 )   $ (0.77 )
Diluted — pro-forma
  $ (3.40 )   $ (1.39 )
 
 
(1) There was no tax effect included in these amounts due to the valuation allowance.
 
Stock Recognition Program.  In May 1992, our Board of Directors established the Cyberonics Employee Stock Recognition Program. Since its inception, a total of 8,200 shares of our common stock have been reserved for issuance as special recognition grants. The shares are granted to employees for special performances and/or contributions at the discretion of our President, based on nominations made by fellow employees. At April 27, 2007, 2,230 shares remain available for future issuances under the program.


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CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

Note 11.   New Accounting Pronouncements
 
In November 2004, the FASB issued SFAS No. 151, “Inventory Costs — an Amendment to ARB No. 43, Chapter 4.” This statement amends the guidance in Accounting Research Bulletin (“ARB”) No. 43, Chapter 4, “Inventory Pricing,” to clarify the accounting for abnormal amounts of idle facility expense, freight, handling costs, and wasted material (spoilage). Paragraph 5 of ARB 43, Chapter 4, previously stated that “...under some circumstances, items such as idle facility expense, excessive spoilage, double freight, and rehandling costs may be so abnormal as to require treatment as current period charges...” This statement requires that those items be recognized as current-period charges regardless of whether they meet the criterion of “so abnormal.” In addition, this statement requires that allocation of fixed production overheads to the costs of conversion be based on the normal capacity of the production facilities. The provisions of this statement are effective for inventory costs incurred during fiscal years beginning after June 15, 2005. The adoption of SFAS No. 151 as of April 29, 2006 did not have a material impact on our consolidated operating results or financial position.
 
In December 2004, the FASB issued SFAS No. 153, “Exchanges of Nonmonetary Assets” (“SFAS 153”), an amendment to APB Opinion No. 29. The guidance in APB Opinion No. 29, “Accounting for Nonmonetary Transactions,” is based on the principle that exchanges of nonmonetary assets should be measured based on the fair value of the assets exchanged. The guidance in that opinion, however, included certain exceptions to that principle. This statement amends APB No. 29 to eliminate the exception for nonmonetary exchanges of similar productive assets and replaces it with a general exception for exchanges of nonmonetary assets that do not have commercial substance. A nonmonetary exchange has commercial substance if the future cash flows of the entity are expected to change significantly as a result of the exchange. The provisions of this statement are effective for nonmonetary asset exchanges occurring in fiscal periods beginning after June 15, 2005. The adoption of SFAS No. 153 as of April 29, 2006 did not have a material impact on our consolidated operating results or financial position.
 
In December 2004, the FASB issued SFAS No. 123(R). This statement supersedes APB Opinion No. 25 and its related implementation guidance. This statement establishes standards for the accounting for transactions in which an entity exchanges its equity instruments for goods or services. It also addresses transactions in which an entity incurs liabilities in exchange for goods or services that are based on the fair value of the entity’s equity instruments or that may be settled by the issuance of those equity instruments. This statement focuses primarily on accounting for transactions in which an entity obtains employee services in share-based payment transactions. This statement does not change the accounting guidance for share-based payment transactions with parties other than employees provided in Statement No. 123 as originally issued and Emerging Issues Task Force (“EITF”) Issue No. 96-18, “Accounting for Equity Instruments That Are Issued to Other Than Employees for Acquiring, or in Conjunction with Selling, Goods or Services.” This statement does not address the accounting for employee share ownership plans, which are subject to American Institute of Certified Public Accountants (“AICPA”) Statement of Position 93-6, “Employers’ Accounting for Employee Stock Ownership Plans.” We have adopted SFAS 123(R) starting on April 29, 2006 using The Black-Scholes Option Pricing Model and The Modified Prospective Method which requires the compensation cost to be recognized under SFAS 123(R) for grants issued after the adoption date and the unvested portion of grants issued prior to the adoption date. As a result of the adoption of SFAS 123(R), we recognized non-cash share-based compensation expense of approximately $19.4 million during fiscal year 2007 including the impact associated with the resignation of certain former officers and employees.
 
In May 2005, the FASB issued SFAS No. 154, “Accounting Changes and Error Corrections — a replacement of Accounting Principles Board (APB) Opinion No. 20 and FASB Statement No. 3.” This statement replaces APB Opinion No. 20, “Accounting Changes,” and FASB Statement No. 3, “Reporting Accounting Changes in Interim Financial Statements,” and changes the requirements for the accounting for and reporting of a change in accounting principle. This statement applies to all voluntary changes in accounting principle. It also applies to changes required by an accounting pronouncement in the unusual instance that the pronouncement does not include specific transition provisions. When a pronouncement includes specific transition provisions, those provisions should be followed. This statement requires that retrospective application of a change in accounting principle be limited to the


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CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

direct effects of the change. Indirect effects of a change in accounting principle, such as a change in nondiscretionary profit-sharing payments resulting from an accounting change, should be recognized in the period of the accounting change. This statement is effective for accounting changes and corrections of errors made in fiscal years beginning December 15, 2005. The adoption of FAS 154 as of April 29, 2006 had no impact on our consolidated operating results or financial position.
 
In September 2006, the FASB issued FAS No. 157, “Fair Value Measurements” (“FAS 157”). This statement defines fair value, establishes a framework for measuring fair value in GAAP and expands disclosures about fair value measurements. This statement applies under other accounting pronouncements that require or permit fair value measurements, the FASB having previously concluded in those accounting pronouncements that fair value is the relevant measurement attribute. Accordingly, this statement does not require any new fair value measurements. However, for some entities, the application of this statement will change current practice. FAS 157 is effective with fiscal years beginning after November 15, 2007. We are currently evaluating the impact that the implementation of FAS 157 may have on our consolidated results of operations and financial position.
 
In December 2006, FASB issued a FASB Staff Position (“FSP”) EITF 00-19-2 “Accounting for Registration Payment Arrangements” (“FSP 00-19-2”). This FSP addresses an issuer’s accounting for registration payment arrangements. This FSP specifies that the contingent obligation to make future payments or otherwise transfer consideration under a registration payment arrangement, whether issued as a separate agreement or included as a provision of a financial instrument or other agreement, should be separately recognized and measured in accordance with FASB Statement No. 5 “Accounting for Contingencies.The guidance in this FSP amends FASB Statements No. 133, “Accounting for Derivative Instruments and Hedging Activities,” and No. 150, “Accounting for Certain Financial Instruments with Characteristics of both Liabilities and Equity,” as well as FASB Interpretation No. 45, “Guarantor’s Accounting and Disclosure Requirements for Guarantees, Including Indirect Guarantees of Indebtedness of Others” to include scope exceptions for registration payment arrangements. This FSP is effective immediately for registration payment arrangements and the financial instruments subject to those arrangements that are entered into or modified subsequent to the date of issuance of this FSP. For registration payment arrangements and financial instruments subject to those arrangements that were entered into prior to the issuance of this FSP, this is effective for financial statements issued for fiscal years beginning after December 15, 2006, and interim periods within those fiscal years. We are currently evaluating the impact that the implementation of FSP EITF 00-19-2 may have on our consolidated results of operations and financial position.
 
In February 2007, the FASB issued FAS No. 159, “The Fair Value Option for Financial Assets and Financial Liabilities — Including an amendment of FASB Statement No. 115” (“FAS 159”). This Statement permits entities to choose to measure many financial instruments and certain other items at fair value. The objective is to improve financial reporting by providing entities with the opportunity to mitigate volatility in reported earnings caused by measuring related assets and liabilities differently without having to apply complex hedge accounting provisions. This Statement is expected to expand the use of fair value measurement, which is consistent with the Board’s long-term measurement objectives for accounting for financial instruments. This Statement is effective as of the beginning of an entity’s first fiscal year that begins after November 15, 2007. Early adoption is permitted as of the beginning of a fiscal year that begins on or before November 15, 2007, provided the entity also elects to apply the provisions of FASB Statement No. 157, “Fair Value Measurements.” We are currently evaluating the impact that the implementation of FAS 159 may have on our consolidated operating results of operations and financial position.
 
In June 2006, FASB issued FAS Interpretation No. 48 “Accounting for Uncertainty in Income Taxes — an interpretation of FASB Statement No. 109” (“FIN 48”). This Interpretation clarifies the accounting for uncertainty in income taxes recognized in an enterprise’s financial statements in accordance with FASB Statement No. 109, “Accounting for Income Taxes.” This Interpretation prescribes a recognition threshold and measurement attribute for the financial statement recognition and measurement of a tax position taken or expected to be taken in a tax return. This Interpretation also provides guidance on derecognition, classification, interest and penalties, accounting in interim periods, disclosure, and transition. The adoption of this Interpretation is required for fiscal years


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NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

beginning after December 15, 2006. We are still evaluating the potential impact that the adoption of FIN 48 as of April 28, 2007 will have on our consolidated operating results or financial position.
 
In September 2006, the SEC issued SAB No. 108, “Considering the Effects of Prior Year Misstatements when Quantifying Misstatements in Current Year Financial Statements” (“SAB 108”). SAB 108 provides guidance on the consideration of the effects of prior year misstatements in quantifying current year misstatements for the purpose of a materiality assessment. SAB 108 establishes an approach that requires quantification of financial statement errors based on the effects of each of the company’s balance sheet and statement of operations and the related financial statement disclosures. We are required to adopt SAB 108 in our annual consolidated financial statements covering the fiscal years ending after November 15, 2006. The adoption of SAB 108 did not have an impact on our consolidated operating results or financial position for the fiscal year ended April 27, 2007.
 
Note 12.   Income Taxes
 
The U.S. and foreign components of loss before income taxes and the provision for income taxes are presented in this table:
 
                         
    52 Weeks Ended  
    April 27, 2007     April 28, 2006     April 29, 2005  
 
Loss before income taxes:
                       
Domestic
  $ (48,172,762 )   $ (57,271,372 )   $ (17,917,356 )
Foreign
    (2,928,570 )     (1,698,554 )     (666,038 )
                         
    $ (51,101,332 )   $ (58,969,926 )   $ (18,583,394 )
                         
Provision for current income tax expense:
                       
Federal
  $     $     $  
State and local
    27,790       39,730        
Foreign
    50,985       59,536       26,113  
                         
    $ 78,775     $ 99,266     $ 26,113  
                         
 
The following is a reconciliation of the statutory federal income tax rate to our effective income tax rate expressed as a percentage of loss before income taxes:
 
                         
    52 Weeks Ended  
    April 27, 2007     April 28, 2006     April 29, 2005  
 
U.S. statutory rate
    (34.0 )%     (34.0 )%     (34.0 )%
Change in deferred tax valuation allowance
    30.2       31.6       32.1  
Foreign taxes
    0.1       0.1       0.1  
State and local tax provision
    0.1       0.1       0.0  
Other, net
    3.8       2.4       1.9  
                         
      0.2 %     0.2 %     0.1 %
                         


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CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

Significant components of our deferred tax assets are as follows:
 
                 
    April 27, 2007     April 28, 2006  
 
Deferred tax assets:
               
Federal net operating loss carryforwards
  $ 82,344,559     $ 74,861,125  
State net operating loss carryforwards and other
    9,337,842       6,543,275  
Deferred compensation expense
    8,238,132       3,710,945  
Foreign net operating loss carryforwards
    7,305,790       6,380,628  
Federal tax credit carryforwards
    4,207,517       4,309,541  
Charitable contribution carryforwards
    877,286       507,781  
Accrued expenses
    710,119       609,128  
Property and equipment
    467,325       312,930  
Inventory costs capitalized
    400,011       310,055  
Reserves
    258,237       283,444  
                 
Total deferred tax assets
    114,146,818       97,828,852  
Deferred tax liabilities, net
           
Deferred tax valuation allowance
    (114,146,818 )     (97,828,852 )
                 
Net deferred tax assets and liabilities
  $     $  
                 
 
At April 27, 2007, we have net operating loss carryforwards of approximately $253.4 million for federal income tax purposes, which expire during the years 2007 through 2026, and tax credit carryforwards of approximately $4.2 million for federal income tax purposes which expire during the years 2007 through 2021. At April 27, 2007, we had net operating loss carryforwards of approximately $112.0 million for state and local income tax purposes, which expire at various dates beginning in 2007. In 2004 and 2006, we experienced an ownership change as defined in Section 382 of the IRC. Our ability to utilize credit carryforwards to offset future tax liabilities and utilize certain net operating losses to offset future taxable income may be limited pursuant to IRC Section 382. We purchased the Note Hedge to buy approximately three million shares of our common stock at an exercise price of $41.50 per share in connection with the issuance of our Convertible Notes during the quarter ended October 28, 2005. The Convertible Notes and the Note Hedge are considered a synthetic debt instrument under the rules of Treasury Regulation 1.1275-6. Tax benefits derived from Note Hedge amortization will be recorded in equity.
 
A valuation allowance is established if it is more-likely-than-not that all or a portion of the deferred tax assets will not be realized. We have historically experienced significant operating losses and operate in an industry subject to rapid technological changes. We believe there is sufficient uncertainty regarding future taxable income and realizability of deferred tax assets such that a valuation allowance is required to fully offset deferred tax assets for the 52 weeks ended April 27, 2007. We continually review the adequacy and necessity of the valuation allowance in accordance with the provision of SFAS No. 109 “Accounting for Income Taxes.” Of the total valuation allowance at April 27, 2007, approximately $20.8 million relates to stock option compensation deductions and $2.4 million relates to amortization of the Note Hedge. The tax benefit associated with stock option compensation deductions and amortization of the Note Hedge will be credited to equity when realized. The valuation allowance increased approximately $16.3 million and $25.0 million for the 52 weeks ended April 27, 2007 and April 28, 2006, respectively, due primarily to an increase in the federal net operating loss carryforwards for tax years 2006 and 2005.


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NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

Note 13.   Employee Retirement Savings Plan
 
We sponsor an employee retirement savings plan (the “Savings Plan”) which qualifies under Section 401(k) of the IRC. The Savings Plan is designed to provide eligible employees with an opportunity to make regular contributions into a long-term investment and savings program. Substantially all U.S. employees are eligible to participate in the Savings Plan beginning with the first quarterly open enrollment date following start of employment. In July 2004, we started matching 50% of employees’ contributions up to 6% of eligible earnings. We incurred expenses applicable to the contributions to this plan in the amounts of approximately $1.2 million, $1.5 million and $0.8 million for the fiscal years 2007, 2006 and 2005, respectively.
 
Note 14.   Commitments and Contingencies
 
Post-market Clinical Surveillance.  Pursuant to the post-market surveillance conditions specified as part of our FDA marketing approval, we are required to conduct two clinical studies on treatment-resistant depression patients. One study of 460 patients, D-21, is a randomized controlled study assessing three different stimulation paradigms. The other study, the TRD Registry, is a longitudinal registry that will follow 1,000 VNS patients and 1,000 non-VNS patients for up to five years. Enrollment in both studies has commenced and is ongoing. We expense the costs related to these long-term follow-up activities as they are incurred and establish accruals for such costs incurred but not paid as of the respective balance sheet dates.
 
License Agreements.  We have executed a license agreement which provides us with worldwide exclusive rights under five U.S. patents (and their international counterparts) covering the method and devices of the VNS Therapy System for vagus nerve and other cranial nerve stimulation for the control of epilepsy and other movement disorders, as well as a number of other conditions and disorders. The license agreement provides that we will pay a royalty equal to the greater of $36,000 per year or at the rate of 3% of net sales of licensed products during fiscal years 2004 through 2011, after which the royalty rate will decline to one percent for the remaining term of the licensed patents. These patents expire between 2011 and 2022. The license agreement runs for successive three-year terms, renewable at our election. The license agreement, and its periods of extension, may not be terminated by the licensor without cause. Our royalty payments pursuant to this agreement are expensed as incurred.
 
We have an agreement with an inventor on two patents co-owned by us pursuant to which we are obligated to pay 1.0% of the first $10 million of net obesity sales covered by one of the patents and 0.5% of net obesity sales thereafter. The agreement also obligates us to pay minimum royalties of $25,000 per year for five years commencing January 1, 2000 and up to $325,000 in additional advanced royalties based on achievement of certain milestones.
 
Royalty expenses for the 52 weeks ended April 27, 2007, April 28, 2006 and April 29, 2005 were $3.8 million, $3.6 million and $3.1 million, respectively.
 
Lease Agreements.  We lease facilities in Houston, Texas and several sales offices in Europe under noncancelable operating leases, as well as transportation and office equipment under noncancelable operating leases. The lease terms provide for tenant improvement allowances that are recorded as deferred rent and amortized, straight-line, as reductions to rent expense over the term of the lease. At April 27, 2007 and April 28, 2006, we had approximately $152,000 and $209,000 of deferred rent, respectively. Scheduled rent increases and rent holidays are recognized on a straight-line basis over the term of the lease.


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CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

Future minimum payments relating to these agreements at April 27, 2007 are as follows:
 
         
52/53 Weeks Ending on the last Friday of April:
       
2008
  $ 3,275,102  
2009
    3,144,808  
2010
    2,157,535  
2011
    23,309  
2012 and thereafter
     
 
Our rental expense for the 52 weeks ended April 27, 2007, April 28, 2006 and April 29, 2005 amounted to approximately $3.2 million, $3.0 million and $2.9 million, respectively.
 
We have agreements whereby we indemnify our officers and directors for certain events or occurrences while the officer or director is, or was, serving at our request in such a capacity. The term of the indemnification period is for the officer’s or director’s lifetime. The maximum potential amount of future payments we could be required to make under these indemnification agreements is unlimited, however, we believe the fair value of these indemnification agreements is minimal.
 
Other Commitments.  At April 27, 2007, we had approximately $177,000 in noncancelable commitments related to domestic marketing programs planned for our VNS Therapy System during fiscal year 2008.
 
Note 15.   Litigation
 
We are named as a defendant in lawsuits or the subject of governmental inquires from time to time arising in the ordinary course of business. The outcome of such lawsuits or other proceedings cannot be predicted with certainty and may have a material adverse effect on our consolidated financial position or results of operations.
 
Indenture Default Litigation
 
In July 2006, we received the Notice of Default from the Trustee, pursuant to which the Trustee asserted that we were in default of our obligations under the Indenture with respect to our Convertible Notes, as a result of our failure (1) to file with the SEC our 2006 Form 10-K by July 12, 2006 and (2) to deliver a copy of the 2006 Form 10-K to the Trustee by July 27, 2006. In October 2006, we received the Notice of Acceleration from the Trustee informing us that, pursuant to the Indenture, the Trustee declared the Convertible Notes due and payable at their principal amount, together with accrued and unpaid interest, fees and expenses, and demanding that all such principal, interest, fees and expenses under the Convertible Notes be paid to the Trustee immediately. To clarify our rights and responsibilities under the Indenture, we filed a declaratory judgment action on October 3, 2006 in Texas state court seeking a declaration that no event of default has occurred under the Indenture and requesting attorney fees under the Declaratory Judgment Act. In January 2007, the Trustee removed the lawsuit to the U.S. District Court for the Southern District of Texas, Cyberonics, Inc. v. Wells Fargo Bank, N.A. as the Trustee under Indenture, Civil Action No. A:07-CV-121, and filed an answer and counterclaim seeking damages for the alleged default. In March 2007, the Trustee filed a motion for partial summary judgment seeking a determination that an event of default has occurred under the Indenture. In April 2007, we responded to the Trustee’s motion and filed a cross-motion for summary judgment seeking a declaration that no event of default has occurred. On June 13, 2007, the district court granted our motion for summary judgment and denied the Trustee’s motion, declaring that “Cyberonics satisfied its contractual obligations and has not breached the Agreement.” In its filings, the Trustee stated that it was seeking approximately $20.0 million in damages plus interest and attorney fees, but it reserved the right to seek immediate payment of full value of the Convertible Notes.
 
The Trustee has not filed an appeal. If the Trustee appeals the district court’s decision, and if the court of appeals reverses the district court’s decision, then a default will have occurred under the Indenture, and all unpaid principal and accrued interest on the outstanding Convertible Notes could be due and payable immediately unless


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NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

we negotiate an amendment to the terms of the Indenture. If the principal and accrued interest on the outstanding Convertible Notes must be repaid immediately, we may not have or be able to obtain access to the funds needed to repay the indebtedness, and we may be forced to seek protection under the Bankruptcy Code.
 
If principal and interest on our indebtedness must be repaid immediately, we do not have the cash resources available to repay the debt. If we were not able to secure additional financing, our ability to continue as a going concern would be uncertain.
 
Securities Class Action Lawsuit
 
On June 17, 2005, a putative class action lawsuit was filed against us and certain of our officers and Robert P. Cummins, then Chairman and Chief Executive Officer, in the United States District Court for the Southern District of Texas. The lawsuit is styled Richard Darquea v. Cyberonics Inc., et al., Civil Action No. H:05-cv-02121. A second lawsuit with similar allegations, styled Stanley Sved v. Cyberonics, Inc., et al., Civil Action No. H:05-cv-2414 was filed on July 12, 2005. On July 28, 2005, the court consolidated the two cases under Civil Action No. H-05-2121, styled In re Cyberonics, Inc. Securities Litigation, and entered a scheduling order. On September 28, 2005, the court appointed EFCAT, Inc., John E. and Cecelia Catogas, Blanca Rodriguez, and Mohamed Bakry as lead plaintiffs and also appointed lead plaintiffs’ counsel.
 
The lead plaintiffs filed a consolidated amended complaint on November 30, 2005. The complaint generally alleged, among other things, that the defendants violated Sections 10(b) and 20(a) of the Exchange Act by making false and misleading statements regarding our Vagus Nerve Stimulation Therapy System device (the “VNS Device”) as a therapy for TRD. On January 30, 2006, the defendants filed a motion to dismiss the consolidated complaint on the basis that the complaint fails to allege facts that state any claim for securities fraud. On July 20, 2006, the District Court granted our motion to dismiss the consolidated complaint, allowing the plaintiffs 30 days to file an amended complaint. The court found that the plaintiffs failed to meet their burden to plead a securities fraud claim with particularity, including failures to allege with particularity a material misstatement or omission, to allege facts sufficient to raise a strong inference of intent or severe recklessness, and to allege sufficiently the causal connection between the plaintiffs’ loss and the defendants’ actions. The court noted that “the deficiencies in Plaintiffs’ complaint might well extend beyond the point of cure,” but nonetheless granted plaintiffs the right to amend their complaint in light of the strong presumption of law favoring a right to amend.
 
On August 18, 2006, the lead plaintiffs filed a First Amended Complaint for Violation of the Securities Laws. The complaint generally alleges, among other things, that the defendants violated Sections 10(b) and 20(a) of the Exchange Act by making false and misleading statements regarding the VNS Device as a therapy for treatment-resistant depression (“TRD”). Lead plaintiffs allege that the defendants failed to disclose that certain individuals associated with the U.S. Food and Drug Administration (“FDA”) had safety and efficacy concerns about the use of the VNS Device for the treatment of depression and questioned the adequacy of evidence of safety and effectiveness we presented to the FDA, that the defendants misrepresented the prospect for payer reimbursement for the VNS Device, that the defendants concealed executive compensation and governance issues, and that the defendants falsely stated that an analyst’s statements about options granted in June 2004 were inaccurate and without merit. Lead plaintiffs seek to represent a class of all persons and entities, except those named as defendants, who purchased or otherwise acquired our securities during the period February 5, 2004 through August 1, 2006. The amended complaint seeks unspecified monetary damages and equitable or injunctive relief, if available.
 
On October 2, 2006, the defendants filed a motion to dismiss the amended complaint on the basis that the complaint fails to allege facts that state any claim for securities fraud. The lead plaintiffs filed an opposition to the motion to dismiss on October 23, 2006, and the defendants filed a reply to the opposition on November 6, 2006. On October 31, 2006, a week before the defendants filed their reply in connection with the motion to dismiss the amended complaint, the Los Angeles County Employees Retirement Association filed a motion seeking to intervene and asking the court to require the lead plaintiffs to republish notice of the amended class action claims. On November 28, 2006, the court issued an order compelling republication of notice and staying the proceeding


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CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

pending determination of the lead plaintiff pursuant to the Private Securities Litigation Reform Act. On December 18, 2006, the lead plaintiffs published notice of the filing of the first amended complaint, stating that investors who purchased our securities during the expanded class period (February 5, 2004 through August 1, 2006, inclusive) may move the court for consideration to be appointed as lead plaintiff within 60 days. In February 2007, the court lifted the stay, and in March 2007, the lead plaintiffs filed a motion seeking leave to file an amended complaint. In April 2007, the court denied the plaintiff’s motion to amend without prejudice and stayed the litigation in light of issues raised in a case that is currently submitted to the U.S. Supreme Court. In June 2007, the court lifted the stay and granted plaintiffs leave to “supplement — not amend” their first amended complaint and granted us leave to “supplement — not amend” our motion to dismiss the first amended complaint. We intend to vigorously defend this lawsuit; however, an adverse result in this lawsuit could have a material adverse effect on us, our consolidated financial position, results of operations and cash flows.
 
Stockholder Derivative Litigation
 
We are named as a nominal defendant in a stockholder derivative lawsuit brought on behalf of the company styled Rudolph v. Cummins, et al pending in the United States District Court for the Southern District of Texas, Houston Division, naming several of our current and former officers and members of our Board as defendants, alleging purported improprieties in our issuance of stock options and the accounting related to such issuances. The operative Amended Complaint also purports to state a putative class action claim against the individual defendants for violation of Section 14(a) of the Exchange Act, as well as claims against the individual defendants for breach of fiduciary duty, gross mismanagement and corporate waste, against the officer defendants for unjust enrichment, and against certain individual defendants for insider trading.
 
We are also named as nominal defendant in five stockholder derivative lawsuits brought on behalf of the company in the District Court of Harris County, Texas, including Smith v. Cummins, pending in the 189th District Court, Adel v. Cummins, pending in the 234th District Court, McKeehan v. Cummins, pending in the 11th District Court, Nussbaum v. Cummins, pending in the 215th District Court and Wunschel v. Cummins, pending in the 165th District Court. They allege purported improprieties in our issuance of stock options and the accounting related to such issuances. These cases were consolidated into a single case, In re Cyberonics, Inc., in January 2007.
 
On November 18, 2006, our Board formed a Special Litigation Committee (“SLC”) to investigate, analyze and evaluate the derivative claims raised in these lawsuits and to determine the actions, if any, we should take with respect to the derivative claims, including whether to pursue, to seek to dismiss or to attempt to resolve the derivative claims in the best interests of us and our stockholders. Our Board appointed as Chairman of the SLC, Hugh M. Morrison, an independent Board member who was appointed to our Board on November 9, 2006. On December 18, 2006, we moved to stay all proceedings in the federal and state derivative lawsuits pending the completion of the SLC process. In April 2007, the federal district court entered an order staying the Rudolph case for 90 days to permit the SLC to complete its investigation.
 
Governmental Investigation of Options Granting Practices
 
On June 9, 2006, the staff of the SEC advised us that it had commenced an informal inquiry of some of our stock option grants. On June 26, 2006, we received a subpoena from the Office of the United States Attorney for the Southern District of New York requesting documents related to our stock option grants’ practices and procedures. On October 23, 2006, the SEC staff made an additional request for certain documents and information related to our revised guidance on February 8, 2006 and our financial results announced on May 1, 2006, our sales for the quarter ended April 28, 2006, coverage or potential coverage of our VNS Therapy System by Blue Cross and Blue Shield of Alabama and Aetna and aging of our accounts receivable since January 1, 2003. We are cooperating with the SEC staff and the U.S. Attorney’s Office. Our Board directed the Audit Committee to conduct an independent investigation of our stock option grants, practices and procedures, including compliance with Generally Accepted


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NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

Accounting Principles and all applicable statutes, rules and regulations, and the Audit Committee retained independent counsel to assist it in completing that review.
 
The Audit Committee, with the assistance of its independent counsel and their forensic accountants, has completed its review of our stock option grants, practices and procedures. The Audit Committee concluded that incorrect measurement dates were used for certain stock option grants made principally during the period from 1998 through 2003. Based on the Audit Committee’s investigation, subsequent internal analysis and discussions with our independent registered public accountants, our Board concluded on November 18, 2006, that we needed to restate certain of our historical consolidated financial statements to record non-cash charges for compensation expense relating to past stock option grants. The effects of these restatements are reflected in the consolidated financial statements, including unaudited quarterly data. None of the restatements have any impact on net cash provided by (used in) operating activities.
 
NASDAQ Delisting Notice
 
On July 13, 2006, we filed a Notification of Late Filing on Form 12b-25 with the SEC disclosing our inability to file timely our 2006 Form 10-K without unreasonable effort or expense. Pursuant to that filing, the deadline for us to file our 2006 Form 10-K was extended to July 27, 2006. On July 27, 2006, we filed a Current Report on Form 8-K indicating that we were unable to file our 2006 Form 10-K with the SEC by July 27, 2006 because we required additional time to complete our previously announced review being conducted by the Audit Committee of our Board of Directors regarding option grants and to resolve any disclosure and accounting issues that may arise from the results of the review.
 
On July 31, 2006, we received a Staff Determination Letter from NASDAQ indicating that we failed to comply with the filing requirement for continued listing set forth in Marketplace Rule 4310(c)(14) as a result of the delay in filing our 2006 Form 10-K, and that our securities were, therefore, subject to delisting from The NASDAQ Global Market. On August 3, 2006, we requested a hearing before a NASDAQ Listing Qualifications Panel (“NASDAQ Panel”) to review the NASDAQ Staff’s Determination Letter. On August 4, 2006, we received formal notice from NASDAQ that the delisting action has been stayed pending a written decision from the NASDAQ Panel.
 
On September 8, 2006, we received a second Staff Determination Letter indicating that we also failed to comply with the filing requirement for continued listing set forth in Marketplace Rule 4310(c)(14) as a result of the delay in filing our First Quarter Form 10-Q and that our securities were, therefore, subject to delisting from The NASDAQ Global Market.
 
On September 14, 2006, the NASDAQ Panel conducted a hearing to review the NASDAQ Staff’s Determination Letter.
 
On November 6, 2006, we received a letter from the NASDAQ Panel informing us that the NASDAQ Panel has determined to grant our request for continued listing on The NASDAQ Stock Market subject to two conditions: (1) on or before November 17, 2006, we must submit additional information to NASDAQ; and (2) on or before December 31, 2006, we must file with the SEC our 2006 Form 10-K and our First Quarter Form 10-Q and any required restatements of our prior financial statements. On November 17, 2006, we submitted the requested additional information to NASDAQ. On December 13, 2006, we received a third Staff Determination Letter from NASDAQ. This third Staff Determination Letter indicated that we also failed to comply with the filing requirement for continued listing set forth in Marketplace Rule 4310(c)(14) as a result of the delay in filing our Second Quarter Form 10-Q and that our securities are, therefore, subject to delisting from The NASDAQ Global Market. This third letter advises us to present our views with respect to this additional deficiency to the NASDAQ Panel in writing no later than December 20, 2006.
 
On December 19, 2006, we sent a letter to the NASDAQ Panel describing the current status of our efforts to regain compliance with the NASDAQ filing requirements and requesting an extension until January 27, 2007 to file our 2006 Form 10-K, First Quarter Form 10-Q and Second Quarter Form 10-Q. On December 28, 2006, we received


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CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

a letter from the NASDAQ Panel extending through January 29, 2007 our deadline for filing our delinquent SEC reports.
 
We filed our 2006 Form 10-K on January 5, 2007. On January 16, 2007, we sent a letter to the NASDAQ Panel describing the current status of our efforts to regain compliance with the NASDAQ filing requirements and requesting an extension until February 4, 2007 to file our First Quarter Form 10-Q and until March 1, 2007 to file our Second Quarter Form 10-Q. We filed our First Quarter Form 10-Q on January 26, 2007. On January 29, 2007, we received a letter from the NASDAQ Panel extending until March 1, 2007 our deadline for filing our Second Quarter Form 10-Q. We filed our Second Quarter Form 10-Q on February 9, 2007. On February 12, 2007, we received a letter from the NASDAQ Panel confirming that we are in compliance with all listing requirements and that our stock will continue to be listed.
 
Senate Finance Committee Investigation
 
In May 2005, we received a letter from the Senate Finance Committee (“SFC”) advising us that it is examining FDA’s handling of our PMA-Supplement for the use of VNS Therapy to address TRD. Following our responses to the May letter, we received a second letter from the SFC in July 2005, to which we responded by providing the requested documents and information. In February 2006, the SFC published a Committee Staff Report entitled, “Review of FDA’s Approval Process for the Vagus Nerve Stimulation System for Treatment-Resistant Depression.” The report states that a senior FDA official approved our VNS Therapy System for TRD despite the conclusion of more than 20 FDA scientists, medical officers and management staff who reviewed our application and that the application did not demonstrate reasonable assurance of safety and effectiveness sufficient for approval in TRD. The report concludes that the FDA did not disclose to the public the scientific dissent within the FDA regarding the effectiveness of the VNS Therapy System for TRD and that the FDA has not ensured that the public has all of the accurate, science-based information regarding the VNS Therapy System for TRD it needs. The report does not accuse us of any misconduct and does not conclude that FDA violated any law, regulation or procedure by approving VNS Therapy for TRD; however, the report states that the SFC staff received a range of allegations regarding FDA and Cyberonics and that allegations other than those addressed in the report may be addressed at a later date. The report follows a year-long investigation conducted by the staff of the SFC, including letters we received in May 2005 and July 2005 requesting documents and information. We cooperated with the SFC staff and provided the requested documents and information.
 
We received a letter in November 2006 and a second letter in March 2007 from Senator Charles Grassley on behalf of the SFC requesting our cooperation in providing certain documents and information relating to (1) our employees, agents, and consultants regarding their meetings and communications with the Centers for Medicare and Medicaid Services (“CMS”) regarding coverage of the VNS Therapy System for TRD and (2) our agents’ and consultants’ participation in presentations, preparation of publications, and advice to government agencies on VNS Therapy for TRD. We are endeavoring to cooperate with Senator Grassley by providing documents and information in response to his requests.
 
Note 16.   Concentrations
 
Our cash equivalents and trade accounts receivable represent potential concentrations of credit risk.
 
We minimize potential concentrations of credit risk in cash equivalents by placing investments in high quality financial instruments and, as required by our corporate investment policy, limiting the amount of investment in any one issuing party. At April 27, 2007, management believes that we have no significant concentrations of credit risk related to these assets and have incurred no material impairments in the carrying values of our cash equivalents.
 
Concentrations of credit risk with respect to trade accounts receivable are limited due to the large number of customers and their dispersion across a number of geographic areas. However, essentially all trade receivables are concentrated in the hospital and healthcare sectors in the U.S. and several other countries and, accordingly, are


F-30


Table of Contents

 
CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

exposed to their respective business, economic and country-specific variables. Although we do not currently foresee a concentrated credit risk associated with these receivables, repayment is dependent upon the financial stability of these industry sectors and the respective countries’ national economies and healthcare systems.
 
We rely upon sole source suppliers for certain of the key components, materials and contract services used in manufacturing the VNS Therapy System. We periodically experience discontinuation or unavailability of components, materials and contract services which may require us to qualify alternative sources or, if no such alternative sources are identified, change our product design. We believe that pursuing and qualifying alternative sources and/or redesigning specific components of the VNS Therapy System, if or when necessary, could consume significant resources. In addition, such changes generally require regulatory submissions and approvals. Any extended delays in or an inability to secure alternative sources for these or other components, materials and contract services could result in product supply and manufacturing interruptions, which could significantly harm our business.
 
We rely upon favorable reimbursement, coverage and coding for VNS Therapy. Essentially all patients implanted with VNS Therapy for the treatment of epilepsy are covered by private payers, Medicare or Medicaid. VNS Therapy for epilepsy has specifically approved codes for physicians, surgeons and hospitals. We are actively pursuing favorable coverage decisions to expand reimbursement to include VNS Therapy for TRD. Our long-term growth may be dependent upon progress in obtaining favorable national and regional coverage policies in TRD and maintaining adequate coverage policies in epilepsy.
 
Note 17.   Geographic Information
 
                         
    Net Sales  
    52 Weeks Ended  
    April 27, 2007     April 28, 2006     April 29, 2005  
 
United States
  $ 111,077,666     $ 107,906,412     $ 90,281,978  
International
    19,890,771       15,535,163       13,160,592  
                         
Total
  $ 130,968,437     $ 123,441,575     $ 103,442,570  
                         
 
                 
    Long-Lived Assets  
    April 27, 2007     April 28, 2006  
 
United States
  $ 11,475,519     $ 14,502,293  
International
    742,107       522,051  
                 
Total
  $ 12,217,626     $ 15,024,344  
                 
 
Sales are classified according to the country of destination, regardless of the shipping point.
 
All assets located outside of the U.S. are classified as “International.”


F-31


Table of Contents

 
CYBERONICS, INC. AND SUBSIDIARY
 
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS — (Continued)

Note 18.   Quarterly Financial Information — Unaudited
 
                                         
    First
    Second
    Third
    Fourth
       
    Quarter     Quarter     Quarter     Quarter     Totals(1)  
 
52 weeks ended April 27, 2007
                                       
Net sales
  $ 33,731,520     $ 34,140,796     $ 31,664,282     $ 31,431,839     $ 130,968,437  
Gross profit
    29,930,192       30,336,850       26,736,914       25,706,107       112,710,063  
Net loss
    (8,533,387 )     (12,493,703 )     (19,385,300 )     (10,767,717 )     (51,180,107 )
Diluted loss per share
    (0.34 )     (0.49 )     (0.76 )     (0.42 )     (2.01 )
52 weeks ended April 28, 2006 Net sales
  $ 27,019,459     $ 29,070,298     $ 31,304,205     $ 36,047,613     $ 123,441,575  
Gross profit
    23,238,237       25,263,770       27,421,427       31,696,096       107,619,530  
Net loss
    (19,413,960 )     (20,551,212 )     (14,831,742 )     (4,272,278 )     (59,069,192 )
Diluted loss per share
    (0.78 )     (0.82 )     (0.60 )     (0.17 )     (2.37 )
 
 
(1) EPS in each quarter is computed using the weighted-average number of shares outstanding during that quarter while EPS for the full year is computed using the weighted-average number of shares outstanding during the year. Thus, the sum for the four quarters’ EPS does not necessarily equal the full year EPS.
 
Note 19.   Subsequent Events
 
Excise Tax Remediation Under Internal Revenue Code Section 409A
 
Section 409A of the IRC imposes an excise tax on a grantee’s gain from the exercise of a stock option granted with an exercise price less than the fair market value of the stock on the date of the grant. The excise tax applies only to that portion of a grant that vests after December 31, 2004, and any grants that vest after December 31, 2004 and are exercised on or before December 31, 2005 are exempt from the excise tax. The regulations under Section 409A permit us to avoid the excise tax by adjusting the exercise price for an affected grant up to the fair market value on the date of the grant. As to non-Section 16 officers, the adjustment must be implemented by December 31, 2007.
 
As discussed in “Note 15. Litigation — Governmental Investigations of Options Granting Practices,” the Audit Committee concluded that incorrect measurement dates were used for certain of our stock option grants. Unless the exercise price for certain of these grants is adjusted to the fair market value on the date of the grant, the grantees will be subject to the Section 409A excise tax.
 
In June 2007, we launched a tender offer to our employees offering a payment in January 2008 in exchange for their agreement to amend their stock option agreements to adjust the exercise price of their incorrectly priced option grants to the lower of the fair market value on the revised measurement date of the grant or the closing selling price per share of our common stock on the date on which the eligible options are amended. We estimate that the cost of this tender offer will be approximately $0.6 million. The actual cost will depend on the closing price of our stock on the date the tender offer is closed and the actual number of shares tendered and will be recorded during the first quarter of fiscal 2008.


F-32


Table of Contents

INDEX TO EXHIBITS
 
The exhibits marked with the asterisk symbol (*) are filed with this Form 10-K. The exhibits marked with the cross symbol (†) are management contracts or compensatory plans or arrangements filed pursuant to Item 601(b)(10)(iii) of Regulation S-K.
 
                     
            SEC File or
   
Exhibit
          Registration
  Exhibit
Number
  Document Description   Report or Registration Statement  
Number
 
Reference
 
  3 .1   Amended and Restated Certificate of Incorporation of Cyberonics, Inc.   Cyberonics, Inc.’s Registration Statement on Form S-3 filed on February 21, 2001   333-56022   3.1
  3 .2   Bylaws of Cyberonics, Inc.   Cyberonics, Inc.’s Current Report on Form 8-K filed on September 12, 2000   000-19806   3.1
  3 .3   Amendment No. 1 to the Bylaws of Cyberonics, Inc.   Cyberonics, Inc.’s Current Report on Form 8-K filed on March 30, 2001   000-19806   3.1
  4 .1   Second Amended and Restated Preferred Shares Rights Agreement dated August 21, 2000 between Cyberonics, Inc. and BankBoston, N.A. (formerly known as The First National Bank of Boston), including the Form of First Amended Certificate of Designation of Rights, Preferences and Privileges of Series A Participating Preferred Stock of Cyberonics, Inc., Form of Rights Certificate and Stockholder Rights Plan attached thereto as Exhibits A, B and C, respectively   Cyberonics, Inc.’s Current Report on Form 8-K filed on September 12, 2000   000-19806   4.1
  4 .2   Amendment No. 1 to Second Amended and Restated Preferred Share Rights Agreement dated April 26, 2001   Cyberonics, Inc.’s Annual Report and Transition Report on Form 10-K for the fiscal period ended April 27, 2001 and the transition period from July 1, 2000 to April 27, 2001   000-19806   4.2
  4 .3   Amendment No. 2 to Second Amended and Restated Preferred Share Rights Agreement dated October 31, 2001   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 30, 2004   000-19806   4.3
  4 .4   Amendment No. 3 to Second Amended and Restated Preferred Share Rights Agreement dated December 9, 2003   Cyberonics, Inc.’s Current Report on Form 8-K filed on December 12, 2003   000-19806   99.2
  4 .5   Amendment No. 4 to Second Amended and Restated Preferred Share Rights Agreement dated January 9, 2004   Cyberonics, Inc.’s Current Report on Form 8-K filed on January 13, 2004   000-19806   99.2
  4 .6   Indenture dated September 27, 2005 between Cyberonics, Inc. and Wells Fargo Bank, National Association, as Trustee   Cyberonics, Inc.’s Current Report on Form 8-K filed on October 3, 2005   000-19806   10.1
  4 .7   Registration Rights Agreement dated September 27, 2005 between Cyberonics, Inc. and Merrill Lynch, Pierce, Fenner & Smith Incorporated, as the Initial Purchaser   Cyberonics, Inc.’s Current Report on Form 8-K filed on October 3, 2005   000-19806   10.2
  4 .8   Form of Confirmation of OTC Convertible Note Hedge executed September 21, 2005 to be effective September 27, 2005   Cyberonics, Inc.’s Current Report on Form 8-K filed on October 3, 2005   000-19806   10.3
  4 .9   Form of Confirmation of OTC Warrant Transaction executed September 21, 2005 to be effective September 27, 2005   Cyberonics, Inc.’s Current Report on Form 8-K filed on October 3, 2005   000-19806   10.4
  4 .10   Amendment No. 5 to Second Amended and Restated Preferred Share Rights Agreement   Cyberonics, Inc.’s Current Report on Form 8-K filed on February 1, 2007   000-19806   4.1
  10 .1   License Agreement dated March 15, 1988 between Cyberonics, Inc. and Dr. Jacob Zabara   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.1
  10 .2   License Agreement dated August 22, 2000 between Cyberonics, Inc. and Dr. Mitchell S. Roslin   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.2


Table of Contents

                     
            SEC File or
   
Exhibit
          Registration
  Exhibit
Number
  Document Description   Report or Registration Statement  
Number
 
Reference
 
  10 .3   Lease Agreement dated December 5, 2002 between Cyberonics, Inc., as Lessee, and Space Center Operating Associates, LP, as Lessor, commencing on December 8, 2002 for Space “A” and January 1, 2004 for Space “B,” as amended March 3, 2003 (First Amendment), October 2, 2003 (Second Amendment), March 11, 2004 (Third Amendment), March 17, 2004 (Subordination, Non-Disturbance and Attornment), March 19, 2004 (Transfer of Ownership to Triple Net Properties, LLC), March 23, 2005 (Fourth Amendment), May 5, 2005 (Fifth Amendment) and July 13, 2005 (Sixth Amendment)   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.3
  10 .4   Letter Agreement dated March 28, 1997 between The Clark Estates, Inc. and Cyberonics, Inc.   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended June 30, 1997   000-19806   10.11
  10 .5   Purchase Agreement dated September 21, 2005 between Cyberonics, Inc. and Merrill Lynch, Pierce, Fenner & Smith Incorporated, as the Initial Purchaser   Cyberonics, Inc.’s Current Report on Form 8-K filed on September 27, 2005   000-19806   10.1
  10 .6   Credit Agreement between Cyberonics, Inc. and Merrill Lynch Capital, a division of Merrill Lynch Business Financial Services Inc., as Administrative Agent and as Lender and as Sole Bookrunner and Sole Lead Arranger, and the additional Lenders thereto dated January 13, 2006   Cyberonics, Inc.’s Current Report on Form 8-K filed on January 19, 2006   000-19806   10.1
  10 .7   Consent and Amendment Agreement effective October 31, 2006 to the Credit Agreement between Cyberonics, Inc. and Merrill Lynch Capital, a division of Merrill Lynch Business Financial Services Inc., individually as Lender, Administrative Agent, Sole Bookrunner and Sole Lead Arranger, and the additional Lenders thereto   Cyberonics, Inc.’s Current Report on Form 8-K filed on November 6, 2006   000-19806   10.1
  10 .8   Consent and Amendment Agreement effective July 27, 2006 to the Credit Agreement between Cyberonics, Inc. and Merrill Lynch Capital, a division of Merrill Lynch Business Financial Services Inc., individually as Lender, Administrative Agent, Sole Bookrunner and Sole Lead Arranger, and the additional Lenders thereto   Cyberonics, Inc.’s Current Report on Form 8-K filed on July 27, 2006   000-19806   10.1
  10 .9   Consulting Agreement between Cyberonics, Inc. and BK Consulting, an assumed name used by Reese S. Terry, Jr., a founder and member of the Board of Directors of Cyberonics, Inc., dated August 25, 2005   Cyberonics, Inc.’s Current Report on Form 8-K filed on August 30, 2005   000-19806   99.1
  10 .10   Amendment to Consulting Agreement between Cyberonics, Inc. and BK Consulting dated August 23, 2006   Cyberonics, Inc.’s Current Report on Form 8-K filed on August 25, 2006   000-19806   10.1
  10 .11   Termination of Consulting Agreement between Cyberonics, Inc. and BK Consulting effective November 19, 2006   Cyberonics, Inc.’s Current Report on Form 8-K filed on December 13, 2006   000-19806   10.1
  10 .12   Consulting Agreement dated November 19, 2006 between Cyberonics, Inc. and Pamela B. Westbrook   Cyberonics, Inc.’s Current Report on Form 8-K filed on November 20, 2006   000-19806   10.3


Table of Contents

                     
            SEC File or
   
Exhibit
          Registration
  Exhibit
Number
  Document Description   Report or Registration Statement  
Number
 
Reference
 
  10 .13†   Cyberonics, Inc. Amended and Restated 1996 Stock Option Plan   Cyberonics, Inc.’s Registration Statement on Form S-8 filed on April 29, 1999   333-77361   4.1
  10 .14†   First Amendment to the Cyberonics, Inc. Amended and Restated 1996 Stock Option Plan dated October 2, 2000   Cyberonics, Inc.’s Quarterly Report on Form 10-Q for the quarter ended September 30, 2000   000-19806   10.2
  10 .15†   Second Amendment to the Cyberonics, Inc. Amended and Restated 1996 Stock Option Plan dated March 21, 2001   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 30, 2004   000-19806   10.12
  10 .16†   Third Amendment to the Cyberonics, Inc. Amended and Restated 1996 Stock Option Plan dated July 27, 2001   Cyberonics, Inc.’s Registration Statement on Form S-8 filed on January 22, 2002   333-81158   4.4
  10 .17†   Fourth Amendment to the Cyberonics, Inc. Amended and Restated 1996 Stock Option Plan dated January 2002   Cyberonics, Inc.’s Registration Statement on Form S-8 filed on January 22, 2002   333-81158   4.5
  10 .18†   Fifth Amendment to the Cyberonics, Inc. Amended and Restated 1996 Stock Option Plan dated July 19, 2002   Cyberonics, Inc.’s Registration Statement on Form S-8 filed on July 25, 2002   333-97095   4.1
  10 .19†   Cyberonics, Inc. Amended and Restated 1997 Stock Plan   Cyberonics, Inc.’s Registration Statement on Form S-8 filed on March 8, 2001   333-56694   4.5
  10 .20†   First Amendment to the Cyberonics, Inc. Amended and Restated 1997 Stock Plan dated March 21, 2001   Cyberonics, Inc.’s Quarterly Report on Form 10-Q for the quarter ended July 26, 2002   000-19806   10.1
  10 .21†   Second Amendment to the Cyberonics, Inc. Amended and Restated 1997 Stock Plan dated November 21, 2002   Cyberonics, Inc.’s Proxy Statement for the Annual Meeting of Stockholders filed on October 15, 2002   000-19806   Annex B
  10 .22†   Cyberonics, Inc. 1998 Stock Option Plan   Cyberonics, Inc.’s Registration Statement on Form S-8 filed on November 3, 1998   333-66691   4.1
  10 .23†   First Amendment to the Cyberonics, Inc. 1998 Stock Option Plan dated March 21, 2001   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 30, 2004   000-19806   10.23
  10 .24†   Cyberonics, Inc. New Employee Equity Inducement Plan   Cyberonics, Inc.’s Registration Statement on Form S-8 filed on August 27, 2003   333-108281   4.3
  10 .25†   Cyberonics, Inc. 2005 Stock Plan   Cyberonics, Inc.’s Proxy Statement for the Special Meeting of Stockholders filed on April 14, 2005   000-19806   Annex A
  10 .26†   Indemnification Agreement effective August 1, 2003 between Cyberonics, Inc. and Robert P. Cummins   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.32
  10 .27†   Employment Agreement effective August 5, 2005 between Cyberonics, Inc. and Robert P. Cummins   Cyberonics, Inc.’s Current Report on Form 8-K filed on August 9, 2005   000-19806   99.1
  10 .28†   Letter Agreement Regarding Advancement of Attorney’s Fees effective September 28, 2006 between Cyberonics, Inc. and Robert P. Cummins   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.34
  10 .29†   Resignation Agreement effective November 17, 2006 between Cyberonics, Inc. and Robert P. Cummins   Cyberonics, Inc.’s Current Report on Form 8-K filed on November 20, 2006   000-19806   10.1
  10 .30†   Severance Agreement effective June 1, 2003 between Cyberonics, Inc. and William Steven Jennings   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 25, 2003   000-19806   10.21
  10 .31†   Officer Stock Option Plan Agreement dated June 2, 2003 between Cyberonics, Inc. and William Steven Jennings   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.37
  10 .32†   Employment Agreement effective June 15, 2006 between Cyberonics, Inc. and William Steven Jennings   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.38


Table of Contents

                     
            SEC File or
   
Exhibit
          Registration
  Exhibit
Number
  Document Description   Report or Registration Statement  
Number
 
Reference
 
  10 .33†   Indemnification Agreement effective June 28, 1999 between Cyberonics, Inc. and Alan J. Olsen   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.44
  10 .34†   Severance Agreement effective July 14, 2003 between Cyberonics, Inc. and George E. Parker   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 30, 2004   000-19806   10.40
  10 .35†   Officer Stock Option Plan Agreement dated July 14, 2003 between Cyberonics, Inc. and George E. Parker   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.46
  10 .36†   Employment Agreement effective July 14, 2003 between Cyberonics, Inc. and George E. Parker   Cyberonics, Inc.’s Quarterly Report on Form 10-Q for the quarter ended October 24, 2003   000-19806   10.1
  10 .37†   First Amendment to Employment Agreement effective June 15, 2006 between Cyberonics, Inc. and George E. Parker   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.48
  10 .38†   Stand Alone Stock Option Agreement dated August 23, 2001 between Cyberonics, Inc. and Richard L. Rudolph, M.D.   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.49
  10 .39†   Severance Agreement effective January 1, 2002 between Cyberonics, Inc. and Richard L. Rudolph, M.D.   Cyberonics, Inc.’s Quarterly Report on Form 10-Q for the quarter ended January 25, 2002   000-19806   10.3
  10 .40†   Employee Restricted Stock Agreement dated July 22, 2005 between Cyberonics, Inc. and Richard L. Rudolph, M.D.   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.51
  10 .41†   Employment Agreement effective June 15, 2006 between Cyberonics, Inc. and Richard L. Rudolph, M.D.   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.52
  10 .42†   Stock Option Agreement Amendment and Bonus Agreement dated December 28, 2006 between Cyberonics, Inc. and Richard L. Rudolph, M.D.   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.53
  10 .43†   Employment Agreement effective June 15, 2006 between Cyberonics, Inc. and Pamela B. Westbrook   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.58
  10 .44†   Letter Agreement Regarding Advancement of Attorney’s Fees effective October 12, 2006 between Cyberonics, Inc. and Pamela B. Westbrook   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.59
  10 .45†   Resignation Agreement effective November 19, 2006 between Cyberonics, Inc. and Pamela B. Westbrook   Cyberonics, Inc.’s Current Report on Form 8-K filed on November 20, 2006   000-19806   10.45
  10 .46†   Indemnification Agreement effective August 1, 2003 between Cyberonics, Inc. and David S. Wise   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.61
  10 .47†   Severance Agreement effective September 17, 2003 between Cyberonics, Inc. and David S. Wise   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 30, 2004   000-19806   10.42
  10 .48†   Employment Agreement effective September 17, 2003 between Cyberonics, Inc. and David S. Wise   Cyberonics, Inc.’s Quarterly Report on Form 10-Q for the quarter ended October 24, 2003   000-19806   10.2
  10 .49†   First Amendment to Employment Agreement effective June 15, 2006 between Cyberonics, Inc. and David S. Wise   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.64
  10 .50†   New Employee Equity Inducement Plan Agreement dated September 17, 2003 between Cyberonics, Inc. and David S. Wise   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.65


Table of Contents

                     
            SEC File or
   
Exhibit
          Registration
  Exhibit
Number
  Document Description   Report or Registration Statement  
Number
 
Reference
 
  10 .51†   Form of Indemnification Agreement for directors of Cyberonics, Inc.   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.66
  10 .52†   Form of Director Restricted Stock Agreement effective June 1, 2005   Cyberonics, Inc.’s Quarterly Form 10-Q for the quarter ended July 29, 2005   000-19806   10.52
  10 .53†   Form of Amendment to Director Stock Option Agreement dated December 2006 between Cyberonics, Inc. and the directors listed on the schedule attached thereto   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.68
  10 .54†   Form of Stock Option Agreement under the Cyberonics, Inc. Amended and Restated 1996 Stock Option Plan between Cyberonics, Inc. and the executive officers listed on the schedule attached thereto   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.69
  10 .55†   Form of Stock Option Agreement under the Cyberonics, Inc. 2005 Stock Plan between Cyberonics, Inc. and the executive officers listed on the schedule attached thereto   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.70
  10 .56†   Form of Employee Restricted Stock Agreement under the Cyberonics, Inc. 2005 Stock Plan (one-year vesting)   Cyberonics, Inc.’s Quarterly Form 10-Q for the quarter ended July 29, 2005   000-19806   10.2
  10 .57†   Form of Employee Restricted Stock Agreement under the Cyberonics, Inc. 2005 Stock Plan (five-year vesting) and the executive officers listed on the schedule attached thereto   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   10.72
  10 .58†   Consent and Amendment Agreement, dated December 29, 2006, by and among Cyberonics, Inc., Merrill Lynch Capital, and the Lenders party to the Credit Agreement (as defined therein)   Cyberonics, Inc.’s Current Report on Form 8-K filed on January 5, 2007   000-19806   10.1
  10 .59†   Separation Agreement between Steve Jennings and Cyberonics, Inc., dated January 31, 2007   Cyberonics, Inc.’s Current Report on Form 8-K filed on February 6, 2007   000-19806   10.1
  10 .60†   Amended and Restated Cyberonics, Inc. New Employee Inducement Plan   Cyberonics, Inc.’s Current Report on Form 8-K filed on April 30, 2007   000-19806   10.1
  10 .61†   Employment Agreement by and between Cyberonics, Inc. and Daniel Jeffrey Moore   Cyberonics, Inc.’s Current Report on Form 8-K filed on May 1, 2007   000-19806   10.1
  10 .62†   Release Agreement by and between Cyberonics, Inc. and John Riccardi   Cyberonics, Inc.’s Current Report on Form 8-K filed on May 10, 2007   000-19806   10.1
  10 .63†*   Retention Agreement by and between Cyberonics, Inc. and John Riccardi dated November 14, 2005            
  10 .64†*   Description Of Non-Equity Incentive Compensation Plans            
  10 .65†*   Consulting Agreement between Cyberonics, Inc. and BK Consulting, an assumed name used by Reese S. Terry, Jr., a founder and member of the Board of Directors of Cyberonics, Inc., dated May 16, 2007            
  10 .66†*   Executive Restricted Stock Agreement between Cyberonics, Inc. and Daniel J. Moore dated June 18, 2007            
  10 .67†*   Description of Non-Equity Incentive Compensation under the Employment Agreement of Robert P. Cummins            


Table of Contents

                     
            SEC File or
   
Exhibit
          Registration
  Exhibit
Number
  Document Description   Report or Registration Statement  
Number
 
Reference
 
  21 .1   List of Subsidiaries of Cyberonics, Inc.   Cyberonics, Inc.’s Annual Report on Form 10-K for the fiscal period ended April 28, 2006   000-19806   21.1
  23 .1*   Consent of Independent Registered Public Accounting Firm, KPMG LLP            
  24 .1*   Powers of Attorney (included on the Signature Page to this Annual Report on Form 10-K)            
  31 .1*   Certification of the Chief Executive Officer of Cyberonics, Inc. pursuant to Section 302 of the Sarbanes-Oxley Act of 2002            
  31 .2*   Certification of the Chief Financial Officer of Cyberonics, Inc. pursuant to Section 302 of the Sarbanes-Oxley Act of 2002            
  32 .1*   Certification of the Chief Executive Officer and Chief Financial Officer of Cyberonics, Inc. pursuant to Section 906 of the Sarbanes-Oxley Act of 2002